Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 AL031258.1-201ENST00000623562 325 ntBASIC31.28■■■□□ 2.6
TTC28Q96AY4 HES6-203ENST00000409160 1600 ntTSL 2 BASIC31.26■■■□□ 2.6
TTC28Q96AY4 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
TTC28Q96AY4 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC31.24■■■□□ 2.59
TTC28Q96AY4 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
TTC28Q96AY4 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC31.23■■■□□ 2.59
TTC28Q96AY4 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
TTC28Q96AY4 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC31.2■■■□□ 2.59
TTC28Q96AY4 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC31.2■■■□□ 2.59
TTC28Q96AY4 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC31.2■■■□□ 2.58
TTC28Q96AY4 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC31.14■■■□□ 2.57
TTC28Q96AY4 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC31.11■■■□□ 2.57
TTC28Q96AY4 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC31.09■■■□□ 2.57
TTC28Q96AY4 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
TTC28Q96AY4 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC31.08■■■□□ 2.57
TTC28Q96AY4 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
TTC28Q96AY4 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC31.07■■■□□ 2.56
TTC28Q96AY4 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
TTC28Q96AY4 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
TTC28Q96AY4 SETD8P1-201ENST00000623146 1180 ntBASIC31■■■□□ 2.55
TTC28Q96AY4 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC31■■■□□ 2.55
TTC28Q96AY4 HLA-V-202ENST00000446817 847 ntBASIC30.99■■■□□ 2.55
TTC28Q96AY4 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC30.98■■■□□ 2.55
TTC28Q96AY4 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
TTC28Q96AY4 AL162393.1-201ENST00000437852 946 ntBASIC30.97■■■□□ 2.55
TTC28Q96AY4 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC30.96■■■□□ 2.55
TTC28Q96AY4 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC30.96■■■□□ 2.55
TTC28Q96AY4 NRG1-221ENST00000614767 762 ntTSL 5 BASIC30.94■■■□□ 2.54
TTC28Q96AY4 MIR7108-201ENST00000614319 87 ntBASIC30.92■■■□□ 2.54
TTC28Q96AY4 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC30.91■■■□□ 2.54
TTC28Q96AY4 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
TTC28Q96AY4 PVT1-219ENST00000523427 938 ntTSL 3 BASIC30.88■■■□□ 2.53
TTC28Q96AY4 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
TTC28Q96AY4 ABHD17AP4-201ENST00000411545 909 ntBASIC30.82■■■□□ 2.52
TTC28Q96AY4 AP006261.1-201ENST00000584783 668 ntBASIC30.82■■■□□ 2.52
TTC28Q96AY4 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
TTC28Q96AY4 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC30.78■■■□□ 2.52
TTC28Q96AY4 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC30.78■■■□□ 2.52
TTC28Q96AY4 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
TTC28Q96AY4 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
TTC28Q96AY4 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC30.74■■■□□ 2.51
TTC28Q96AY4 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
TTC28Q96AY4 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
TTC28Q96AY4 KLF16-203ENST00000592313 508 ntTSL 3 BASIC30.71■■■□□ 2.51
TTC28Q96AY4 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
TTC28Q96AY4 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
TTC28Q96AY4 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC30.67■■■□□ 2.5
TTC28Q96AY4 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
TTC28Q96AY4 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC30.64■■■□□ 2.5
TTC28Q96AY4 MBP-237ENST00000579129 1052 ntTSL 5 BASIC30.64■■■□□ 2.49
TTC28Q96AY4 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
TTC28Q96AY4 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC30.62■■■□□ 2.49
TTC28Q96AY4 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC30.61■■■□□ 2.49
TTC28Q96AY4 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
TTC28Q96AY4 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC30.56■■■□□ 2.48
TTC28Q96AY4 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
TTC28Q96AY4 EBPL-203ENST00000378270 579 ntTSL 2 BASIC30.56■■■□□ 2.48
TTC28Q96AY4 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC30.55■■■□□ 2.48
TTC28Q96AY4 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC30.51■■■□□ 2.48
TTC28Q96AY4 MLEC-202ENST00000412616 841 ntTSL 3 BASIC30.47■■■□□ 2.47
TTC28Q96AY4 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC30.45■■■□□ 2.47
TTC28Q96AY4 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
TTC28Q96AY4 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC30.43■■■□□ 2.46
TTC28Q96AY4 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC30.43■■■□□ 2.46
TTC28Q96AY4 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC30.41■■■□□ 2.46
TTC28Q96AY4 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
TTC28Q96AY4 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC30.39■■■□□ 2.46
TTC28Q96AY4 HNRNPLP2-201ENST00000568980 1570 ntBASIC30.39■■■□□ 2.46
TTC28Q96AY4 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
TTC28Q96AY4 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC30.39■■■□□ 2.46
TTC28Q96AY4 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC30.37■■■□□ 2.45
TTC28Q96AY4 CAHM-201ENST00000604200 896 ntBASIC30.35■■■□□ 2.45
TTC28Q96AY4 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
TTC28Q96AY4 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
TTC28Q96AY4 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
TTC28Q96AY4 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC30.29■■■□□ 2.44
TTC28Q96AY4 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC30.28■■■□□ 2.44
TTC28Q96AY4 AL391121.1-201ENST00000607967 1349 ntBASIC30.28■■■□□ 2.44
TTC28Q96AY4 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
TTC28Q96AY4 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC30.26■■■□□ 2.43
TTC28Q96AY4 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC30.19■■■□□ 2.42
TTC28Q96AY4 MIR3665-201ENST00000578708 105 ntBASIC30.19■■■□□ 2.42
TTC28Q96AY4 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
TTC28Q96AY4 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC30.18■■■□□ 2.42
TTC28Q96AY4 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC30.18■■■□□ 2.42
TTC28Q96AY4 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
TTC28Q96AY4 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC30.17■■■□□ 2.42
TTC28Q96AY4 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC30.15■■■□□ 2.42
TTC28Q96AY4 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
TTC28Q96AY4 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC30.14■■■□□ 2.42
TTC28Q96AY4 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
TTC28Q96AY4 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
TTC28Q96AY4 MIR4449-201ENST00000578365 66 ntBASIC30.13■■■□□ 2.41
TTC28Q96AY4 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
TTC28Q96AY4 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC30.12■■■□□ 2.41
TTC28Q96AY4 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC30.11■■■□□ 2.41
TTC28Q96AY4 AC087741.3-201ENST00000624270 1347 ntBASIC30.08■■■□□ 2.41
TTC28Q96AY4 RPS2-202ENST00000526522 924 ntTSL 2 BASIC30.07■■■□□ 2.4
TTC28Q96AY4 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC30.07■■■□□ 2.4
TTC28Q96AY4 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms