Protein–RNA interactions for Protein: Q8TER0

SNED1, Sushi, nidogen and EGF-like domain-containing protein 1, humanhuman

Predictions only

Length 1,413 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNED1Q8TER0 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC36.42■■■■□ 3.42
SNED1Q8TER0 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC36.41■■■■□ 3.42
SNED1Q8TER0 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC36.41■■■■□ 3.42
SNED1Q8TER0 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC36.37■■■■□ 3.41
SNED1Q8TER0 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC36.35■■■■□ 3.41
SNED1Q8TER0 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC36.35■■■■□ 3.41
SNED1Q8TER0 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC36.35■■■■□ 3.41
SNED1Q8TER0 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC36.32■■■■□ 3.41
SNED1Q8TER0 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC36.32■■■■□ 3.4
SNED1Q8TER0 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC36.32■■■■□ 3.4
SNED1Q8TER0 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC36.3■■■■□ 3.4
SNED1Q8TER0 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC36.25■■■■□ 3.39
SNED1Q8TER0 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC36.25■■■■□ 3.39
SNED1Q8TER0 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC36.23■■■■□ 3.39
SNED1Q8TER0 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC36.23■■■■□ 3.39
SNED1Q8TER0 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC36.21■■■■□ 3.39
SNED1Q8TER0 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC36.2■■■■□ 3.39
SNED1Q8TER0 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC36.08■■■■□ 3.37
SNED1Q8TER0 RARRES2P7-201ENST00000567349 469 ntBASIC36.07■■■■□ 3.36
SNED1Q8TER0 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC36.06■■■■□ 3.36
SNED1Q8TER0 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC36.06■■■■□ 3.36
SNED1Q8TER0 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC36.03■■■■□ 3.36
SNED1Q8TER0 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC36.02■■■■□ 3.36
SNED1Q8TER0 AC136428.2-201ENST00000563187 214 ntBASIC36■■■■□ 3.35
SNED1Q8TER0 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC35.96■■■■□ 3.35
SNED1Q8TER0 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC35.95■■■■□ 3.35
SNED1Q8TER0 EBPL-203ENST00000378270 579 ntTSL 2 BASIC35.9■■■■□ 3.34
SNED1Q8TER0 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC35.88■■■■□ 3.33
SNED1Q8TER0 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC35.87■■■■□ 3.33
SNED1Q8TER0 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC35.87■■■■□ 3.33
SNED1Q8TER0 SUZ12P1-203ENST00000578195 985 ntBASIC35.86■■■■□ 3.33
SNED1Q8TER0 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC35.85■■■■□ 3.33
SNED1Q8TER0 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC35.85■■■■□ 3.33
SNED1Q8TER0 AC097358.2-201ENST00000607541 1159 ntBASIC35.83■■■■□ 3.33
SNED1Q8TER0 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC35.8■■■■□ 3.32
SNED1Q8TER0 SETD8P1-201ENST00000623146 1180 ntBASIC35.77■■■■□ 3.32
SNED1Q8TER0 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC35.75■■■■□ 3.31
SNED1Q8TER0 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC35.75■■■■□ 3.31
SNED1Q8TER0 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC35.73■■■■□ 3.31
SNED1Q8TER0 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC35.72■■■■□ 3.31
SNED1Q8TER0 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC35.7■■■■□ 3.31
SNED1Q8TER0 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC35.7■■■■□ 3.3
SNED1Q8TER0 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC35.68■■■■□ 3.3
SNED1Q8TER0 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC35.67■■■■□ 3.3
SNED1Q8TER0 KLF16-203ENST00000592313 508 ntTSL 3 BASIC35.64■■■■□ 3.3
SNED1Q8TER0 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC35.63■■■■□ 3.29
SNED1Q8TER0 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC35.62■■■■□ 3.29
SNED1Q8TER0 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC35.61■■■■□ 3.29
SNED1Q8TER0 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC35.6■■■■□ 3.29
SNED1Q8TER0 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC35.59■■■■□ 3.29
SNED1Q8TER0 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC35.57■■■■□ 3.29
SNED1Q8TER0 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC35.55■■■■□ 3.28
SNED1Q8TER0 RPS2P35-201ENST00000443417 897 ntBASIC35.54■■■■□ 3.28
SNED1Q8TER0 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC35.52■■■■□ 3.28
SNED1Q8TER0 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC35.51■■■■□ 3.28
SNED1Q8TER0 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC35.49■■■■□ 3.27
SNED1Q8TER0 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC35.48■■■■□ 3.27
SNED1Q8TER0 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC35.47■■■■□ 3.27
SNED1Q8TER0 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC35.46■■■■□ 3.27
SNED1Q8TER0 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC35.43■■■■□ 3.26
SNED1Q8TER0 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC35.42■■■■□ 3.26
SNED1Q8TER0 ILK-212ENST00000532063 1617 ntTSL 2 BASIC35.39■■■■□ 3.26
SNED1Q8TER0 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC35.35■■■■□ 3.25
SNED1Q8TER0 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC35.32■■■■□ 3.25
SNED1Q8TER0 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC35.32■■■■□ 3.24
SNED1Q8TER0 CAHM-201ENST00000604200 896 ntBASIC35.28■■■■□ 3.24
SNED1Q8TER0 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC35.25■■■■□ 3.23
SNED1Q8TER0 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC35.25■■■■□ 3.23
SNED1Q8TER0 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC35.24■■■■□ 3.23
SNED1Q8TER0 AC145285.7-201ENST00000614819 1539 ntBASIC35.23■■■■□ 3.23
SNED1Q8TER0 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC35.22■■■■□ 3.23
SNED1Q8TER0 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC35.19■■■■□ 3.22
SNED1Q8TER0 AL162393.1-201ENST00000437852 946 ntBASIC35.19■■■■□ 3.22
SNED1Q8TER0 NRG1-221ENST00000614767 762 ntTSL 5 BASIC35.19■■■■□ 3.22
SNED1Q8TER0 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC35.18■■■■□ 3.22
SNED1Q8TER0 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC35.17■■■■□ 3.22
SNED1Q8TER0 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC35.16■■■■□ 3.22
SNED1Q8TER0 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC35.15■■■■□ 3.22
SNED1Q8TER0 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC35.12■■■■□ 3.21
SNED1Q8TER0 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC35.12■■■■□ 3.21
SNED1Q8TER0 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC35.1■■■■□ 3.21
SNED1Q8TER0 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC35.1■■■■□ 3.21
SNED1Q8TER0 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC35.08■■■■□ 3.21
SNED1Q8TER0 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC35.08■■■■□ 3.21
SNED1Q8TER0 MVK-208ENST00000539696 608 ntTSL 5 BASIC35.08■■■■□ 3.21
SNED1Q8TER0 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC35.07■■■■□ 3.21
SNED1Q8TER0 AL391121.1-201ENST00000607967 1349 ntBASIC35.06■■■■□ 3.2
SNED1Q8TER0 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC35.06■■■■□ 3.2
SNED1Q8TER0 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC35.05■■■■□ 3.2
SNED1Q8TER0 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC35.03■■■■□ 3.2
SNED1Q8TER0 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC35.03■■■■□ 3.2
SNED1Q8TER0 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC35.02■■■■□ 3.2
SNED1Q8TER0 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC34.98■■■■□ 3.19
SNED1Q8TER0 AL133380.1-201ENST00000506013 324 ntBASIC34.98■■■■□ 3.19
SNED1Q8TER0 AP006261.1-201ENST00000584783 668 ntBASIC34.97■■■■□ 3.19
SNED1Q8TER0 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC34.96■■■■□ 3.19
SNED1Q8TER0 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC34.95■■■■□ 3.19
SNED1Q8TER0 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC34.94■■■■□ 3.18
SNED1Q8TER0 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC34.93■■■■□ 3.18
SNED1Q8TER0 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC34.92■■■■□ 3.18
Retrieved 100 of 98,524 protein–RNA pairs in 534.9 ms