Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC36.15■■■■□ 3.38
SMC1BQ8NDV3 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC36.1■■■■□ 3.37
SMC1BQ8NDV3 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC36.07■■■■□ 3.36
SMC1BQ8NDV3 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC36.02■■■■□ 3.36
SMC1BQ8NDV3 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC36.01■■■■□ 3.36
SMC1BQ8NDV3 AC097358.2-201ENST00000607541 1159 ntBASIC36■■■■□ 3.35
SMC1BQ8NDV3 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC35.9■■■■□ 3.34
SMC1BQ8NDV3 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC35.9■■■■□ 3.34
SMC1BQ8NDV3 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC35.87■■■■□ 3.33
SMC1BQ8NDV3 SUZ12P1-203ENST00000578195 985 ntBASIC35.83■■■■□ 3.33
SMC1BQ8NDV3 AC136428.2-201ENST00000563187 214 ntBASIC35.8■■■■□ 3.32
SMC1BQ8NDV3 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC35.77■■■■□ 3.32
SMC1BQ8NDV3 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC35.75■■■■□ 3.31
SMC1BQ8NDV3 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC35.71■■■■□ 3.31
SMC1BQ8NDV3 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC35.71■■■■□ 3.31
SMC1BQ8NDV3 SETD8P1-201ENST00000623146 1180 ntBASIC35.68■■■■□ 3.3
SMC1BQ8NDV3 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC35.63■■■■□ 3.29
SMC1BQ8NDV3 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC35.62■■■■□ 3.29
SMC1BQ8NDV3 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC35.62■■■■□ 3.29
SMC1BQ8NDV3 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC35.6■■■■□ 3.29
SMC1BQ8NDV3 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC35.59■■■■□ 3.29
SMC1BQ8NDV3 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC35.59■■■■□ 3.29
SMC1BQ8NDV3 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC35.55■■■■□ 3.28
SMC1BQ8NDV3 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC35.55■■■■□ 3.28
SMC1BQ8NDV3 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC35.53■■■■□ 3.28
SMC1BQ8NDV3 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC35.5■■■■□ 3.27
SMC1BQ8NDV3 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC35.49■■■■□ 3.27
SMC1BQ8NDV3 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC35.47■■■■□ 3.27
SMC1BQ8NDV3 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC35.45■■■■□ 3.27
SMC1BQ8NDV3 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC35.44■■■■□ 3.26
SMC1BQ8NDV3 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC35.43■■■■□ 3.26
SMC1BQ8NDV3 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC35.37■■■■□ 3.25
SMC1BQ8NDV3 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC35.37■■■■□ 3.25
SMC1BQ8NDV3 KLF16-203ENST00000592313 508 ntTSL 3 BASIC35.36■■■■□ 3.25
SMC1BQ8NDV3 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC35.36■■■■□ 3.25
SMC1BQ8NDV3 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC35.34■■■■□ 3.25
SMC1BQ8NDV3 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC35.34■■■■□ 3.25
SMC1BQ8NDV3 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC35.33■■■■□ 3.25
SMC1BQ8NDV3 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC35.3■■■■□ 3.24
SMC1BQ8NDV3 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC35.28■■■■□ 3.24
SMC1BQ8NDV3 AL162393.1-201ENST00000437852 946 ntBASIC35.27■■■■□ 3.24
SMC1BQ8NDV3 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC35.26■■■■□ 3.24
SMC1BQ8NDV3 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC35.26■■■■□ 3.23
SMC1BQ8NDV3 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC35.25■■■■□ 3.23
SMC1BQ8NDV3 EBPL-203ENST00000378270 579 ntTSL 2 BASIC35.25■■■■□ 3.23
SMC1BQ8NDV3 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC35.24■■■■□ 3.23
SMC1BQ8NDV3 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC35.24■■■■□ 3.23
SMC1BQ8NDV3 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC35.22■■■■□ 3.23
SMC1BQ8NDV3 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC35.21■■■■□ 3.23
SMC1BQ8NDV3 MIR7108-201ENST00000614319 87 ntBASIC35.2■■■■□ 3.23
SMC1BQ8NDV3 AP006261.1-201ENST00000584783 668 ntBASIC35.14■■■■□ 3.22
SMC1BQ8NDV3 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC35.12■■■■□ 3.21
SMC1BQ8NDV3 NRG1-221ENST00000614767 762 ntTSL 5 BASIC35.12■■■■□ 3.21
SMC1BQ8NDV3 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC35.1■■■■□ 3.21
SMC1BQ8NDV3 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC35.1■■■■□ 3.21
SMC1BQ8NDV3 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC35.1■■■■□ 3.21
SMC1BQ8NDV3 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC35.09■■■■□ 3.21
SMC1BQ8NDV3 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC35.07■■■■□ 3.21
SMC1BQ8NDV3 ABHD17AP4-201ENST00000411545 909 ntBASIC35.05■■■■□ 3.2
SMC1BQ8NDV3 PVT1-219ENST00000523427 938 ntTSL 3 BASIC35■■■■□ 3.19
SMC1BQ8NDV3 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC34.97■■■■□ 3.19
SMC1BQ8NDV3 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC34.97■■■■□ 3.19
SMC1BQ8NDV3 HLA-V-202ENST00000446817 847 ntBASIC34.92■■■■□ 3.18
SMC1BQ8NDV3 MBP-237ENST00000579129 1052 ntTSL 5 BASIC34.92■■■■□ 3.18
SMC1BQ8NDV3 CAHM-201ENST00000604200 896 ntBASIC34.92■■■■□ 3.18
SMC1BQ8NDV3 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC34.89■■■■□ 3.18
SMC1BQ8NDV3 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC34.87■■■■□ 3.17
SMC1BQ8NDV3 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC34.86■■■■□ 3.17
SMC1BQ8NDV3 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC34.86■■■■□ 3.17
SMC1BQ8NDV3 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC34.86■■■■□ 3.17
SMC1BQ8NDV3 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC34.85■■■■□ 3.17
SMC1BQ8NDV3 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC34.84■■■■□ 3.17
SMC1BQ8NDV3 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC34.83■■■■□ 3.17
SMC1BQ8NDV3 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC34.82■■■■□ 3.16
SMC1BQ8NDV3 MLEC-202ENST00000412616 841 ntTSL 3 BASIC34.8■■■■□ 3.16
SMC1BQ8NDV3 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC34.8■■■■□ 3.16
SMC1BQ8NDV3 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC34.79■■■■□ 3.16
SMC1BQ8NDV3 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC34.79■■■■□ 3.16
SMC1BQ8NDV3 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC34.78■■■■□ 3.16
SMC1BQ8NDV3 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC34.77■■■■□ 3.16
SMC1BQ8NDV3 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC34.76■■■■□ 3.16
SMC1BQ8NDV3 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC34.75■■■■□ 3.15
SMC1BQ8NDV3 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC34.75■■■■□ 3.15
SMC1BQ8NDV3 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC34.71■■■■□ 3.15
SMC1BQ8NDV3 HNRNPLP2-201ENST00000568980 1570 ntBASIC34.69■■■■□ 3.14
SMC1BQ8NDV3 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC34.68■■■■□ 3.14
SMC1BQ8NDV3 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC34.68■■■■□ 3.14
SMC1BQ8NDV3 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC34.67■■■■□ 3.14
SMC1BQ8NDV3 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC34.67■■■■□ 3.14
SMC1BQ8NDV3 AL391121.1-201ENST00000607967 1349 ntBASIC34.66■■■■□ 3.14
SMC1BQ8NDV3 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC34.66■■■■□ 3.14
SMC1BQ8NDV3 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC34.63■■■■□ 3.13
SMC1BQ8NDV3 MIR3665-201ENST00000578708 105 ntBASIC34.61■■■■□ 3.13
SMC1BQ8NDV3 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC34.59■■■■□ 3.13
SMC1BQ8NDV3 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC34.59■■■■□ 3.13
SMC1BQ8NDV3 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC34.54■■■■□ 3.12
SMC1BQ8NDV3 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC34.53■■■■□ 3.12
SMC1BQ8NDV3 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC34.52■■■■□ 3.12
SMC1BQ8NDV3 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC34.52■■■■□ 3.12
SMC1BQ8NDV3 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC34.5■■■■□ 3.11
Retrieved 100 of 98,524 protein–RNA pairs in 7.6 ms