Protein–RNA interactions for Protein: Q6P087

RPUSD3, Mitochondrial mRNA pseudouridine synthase RPUSD3, humanhuman

Known RBP Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD3Q6P087 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC26.74■■□□□ 1.87
RPUSD3Q6P087 AL031258.1-201ENST00000623562 325 ntBASIC26.72■■□□□ 1.87
RPUSD3Q6P087 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC26.7■■□□□ 1.87
RPUSD3Q6P087 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
RPUSD3Q6P087 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC26.65■■□□□ 1.86
RPUSD3Q6P087 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC26.61■■□□□ 1.85
RPUSD3Q6P087 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC26.61■■□□□ 1.85
RPUSD3Q6P087 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
RPUSD3Q6P087 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC26.57■■□□□ 1.84
RPUSD3Q6P087 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC26.57■■□□□ 1.84
RPUSD3Q6P087 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
RPUSD3Q6P087 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
RPUSD3Q6P087 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC26.54■■□□□ 1.84
RPUSD3Q6P087 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC26.54■■□□□ 1.84
RPUSD3Q6P087 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC26.51■■□□□ 1.83
RPUSD3Q6P087 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC26.48■■□□□ 1.83
RPUSD3Q6P087 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC26.48■■□□□ 1.83
RPUSD3Q6P087 ILK-212ENST00000532063 1617 ntTSL 2 BASIC26.47■■□□□ 1.83
RPUSD3Q6P087 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
RPUSD3Q6P087 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
RPUSD3Q6P087 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
RPUSD3Q6P087 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC26.38■■□□□ 1.81
RPUSD3Q6P087 EBPL-203ENST00000378270 579 ntTSL 2 BASIC26.37■■□□□ 1.81
RPUSD3Q6P087 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC26.35■■□□□ 1.81
RPUSD3Q6P087 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
RPUSD3Q6P087 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC26.32■■□□□ 1.8
RPUSD3Q6P087 RARRES2P7-201ENST00000567349 469 ntBASIC26.31■■□□□ 1.8
RPUSD3Q6P087 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC26.31■■□□□ 1.8
RPUSD3Q6P087 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
RPUSD3Q6P087 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC26.3■■□□□ 1.8
RPUSD3Q6P087 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
RPUSD3Q6P087 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC26.28■■□□□ 1.8
RPUSD3Q6P087 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC26.26■■□□□ 1.79
RPUSD3Q6P087 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC26.26■■□□□ 1.79
RPUSD3Q6P087 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
RPUSD3Q6P087 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
RPUSD3Q6P087 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC26.25■■□□□ 1.79
RPUSD3Q6P087 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC26.25■■□□□ 1.79
RPUSD3Q6P087 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC26.24■■□□□ 1.79
RPUSD3Q6P087 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC26.24■■□□□ 1.79
RPUSD3Q6P087 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC26.23■■□□□ 1.79
RPUSD3Q6P087 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC26.23■■□□□ 1.79
RPUSD3Q6P087 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC26.22■■□□□ 1.79
RPUSD3Q6P087 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC26.18■■□□□ 1.78
RPUSD3Q6P087 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC26.17■■□□□ 1.78
RPUSD3Q6P087 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC26.17■■□□□ 1.78
RPUSD3Q6P087 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC26.16■■□□□ 1.78
RPUSD3Q6P087 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
RPUSD3Q6P087 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC26.1■■□□□ 1.77
RPUSD3Q6P087 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
RPUSD3Q6P087 KLF16-203ENST00000592313 508 ntTSL 3 BASIC26.09■■□□□ 1.77
RPUSD3Q6P087 AC097358.2-201ENST00000607541 1159 ntBASIC26.09■■□□□ 1.77
RPUSD3Q6P087 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC26.09■■□□□ 1.77
RPUSD3Q6P087 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
RPUSD3Q6P087 SETD8P1-201ENST00000623146 1180 ntBASIC26.07■■□□□ 1.76
RPUSD3Q6P087 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC26.03■■□□□ 1.76
RPUSD3Q6P087 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
RPUSD3Q6P087 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC26.02■■□□□ 1.76
RPUSD3Q6P087 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
RPUSD3Q6P087 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC26.01■■□□□ 1.75
RPUSD3Q6P087 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC26■■□□□ 1.75
RPUSD3Q6P087 AC136428.2-201ENST00000563187 214 ntBASIC26■■□□□ 1.75
RPUSD3Q6P087 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
RPUSD3Q6P087 MVK-208ENST00000539696 608 ntTSL 5 BASIC25.95■■□□□ 1.74
RPUSD3Q6P087 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
RPUSD3Q6P087 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC25.93■■□□□ 1.74
RPUSD3Q6P087 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
RPUSD3Q6P087 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC25.89■■□□□ 1.74
RPUSD3Q6P087 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
RPUSD3Q6P087 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
RPUSD3Q6P087 SUZ12P1-203ENST00000578195 985 ntBASIC25.88■■□□□ 1.73
RPUSD3Q6P087 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC25.86■■□□□ 1.73
RPUSD3Q6P087 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
RPUSD3Q6P087 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC25.84■■□□□ 1.73
RPUSD3Q6P087 AC145285.7-201ENST00000614819 1539 ntBASIC25.83■■□□□ 1.73
RPUSD3Q6P087 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
RPUSD3Q6P087 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC25.82■■□□□ 1.72
RPUSD3Q6P087 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC25.81■■□□□ 1.72
RPUSD3Q6P087 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
RPUSD3Q6P087 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
RPUSD3Q6P087 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC25.77■■□□□ 1.72
RPUSD3Q6P087 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC25.74■■□□□ 1.71
RPUSD3Q6P087 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
RPUSD3Q6P087 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
RPUSD3Q6P087 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
RPUSD3Q6P087 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
RPUSD3Q6P087 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
RPUSD3Q6P087 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC25.71■■□□□ 1.71
RPUSD3Q6P087 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC25.69■■□□□ 1.7
RPUSD3Q6P087 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC25.68■■□□□ 1.7
RPUSD3Q6P087 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC25.68■■□□□ 1.7
RPUSD3Q6P087 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC25.68■■□□□ 1.7
RPUSD3Q6P087 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC25.67■■□□□ 1.7
RPUSD3Q6P087 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
RPUSD3Q6P087 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
RPUSD3Q6P087 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
RPUSD3Q6P087 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC25.64■■□□□ 1.69
RPUSD3Q6P087 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
RPUSD3Q6P087 RPS2P35-201ENST00000443417 897 ntBASIC25.63■■□□□ 1.69
RPUSD3Q6P087 CAHM-201ENST00000604200 896 ntBASIC25.63■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms