Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
CHD9Q3L8U1 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC32.13■■■□□ 2.73
CHD9Q3L8U1 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC32.12■■■□□ 2.73
CHD9Q3L8U1 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC32.11■■■□□ 2.73
CHD9Q3L8U1 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC32.1■■■□□ 2.73
CHD9Q3L8U1 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC32.1■■■□□ 2.73
CHD9Q3L8U1 AL031258.1-201ENST00000623562 325 ntBASIC32.09■■■□□ 2.73
CHD9Q3L8U1 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC32.09■■■□□ 2.73
CHD9Q3L8U1 RARRES2P7-201ENST00000567349 469 ntBASIC32.09■■■□□ 2.73
CHD9Q3L8U1 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
CHD9Q3L8U1 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.72
CHD9Q3L8U1 AC136428.2-201ENST00000563187 214 ntBASIC31.98■■■□□ 2.71
CHD9Q3L8U1 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
CHD9Q3L8U1 RPS2P35-201ENST00000443417 897 ntBASIC31.84■■■□□ 2.69
CHD9Q3L8U1 SUZ12P1-203ENST00000578195 985 ntBASIC31.83■■■□□ 2.69
CHD9Q3L8U1 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC31.83■■■□□ 2.69
CHD9Q3L8U1 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC31.81■■■□□ 2.68
CHD9Q3L8U1 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC31.81■■■□□ 2.68
CHD9Q3L8U1 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC31.75■■■□□ 2.67
CHD9Q3L8U1 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
CHD9Q3L8U1 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC31.71■■■□□ 2.67
CHD9Q3L8U1 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
CHD9Q3L8U1 AC097358.2-201ENST00000607541 1159 ntBASIC31.69■■■□□ 2.66
CHD9Q3L8U1 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
CHD9Q3L8U1 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
CHD9Q3L8U1 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC31.62■■■□□ 2.65
CHD9Q3L8U1 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC31.62■■■□□ 2.65
CHD9Q3L8U1 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC31.61■■■□□ 2.65
CHD9Q3L8U1 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
CHD9Q3L8U1 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC31.59■■■□□ 2.65
CHD9Q3L8U1 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
CHD9Q3L8U1 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
CHD9Q3L8U1 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC31.53■■■□□ 2.64
CHD9Q3L8U1 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC31.52■■■□□ 2.64
CHD9Q3L8U1 EBPL-203ENST00000378270 579 ntTSL 2 BASIC31.51■■■□□ 2.63
CHD9Q3L8U1 SETD8P1-201ENST00000623146 1180 ntBASIC31.51■■■□□ 2.63
CHD9Q3L8U1 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC31.5■■■□□ 2.63
CHD9Q3L8U1 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC31.48■■■□□ 2.63
CHD9Q3L8U1 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC31.46■■■□□ 2.63
CHD9Q3L8U1 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC31.46■■■□□ 2.63
CHD9Q3L8U1 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC31.43■■■□□ 2.62
CHD9Q3L8U1 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC31.42■■■□□ 2.62
CHD9Q3L8U1 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
CHD9Q3L8U1 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC31.41■■■□□ 2.62
CHD9Q3L8U1 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC31.41■■■□□ 2.62
CHD9Q3L8U1 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC31.35■■■□□ 2.61
CHD9Q3L8U1 AL162393.1-201ENST00000437852 946 ntBASIC31.34■■■□□ 2.61
CHD9Q3L8U1 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC31.33■■■□□ 2.61
CHD9Q3L8U1 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC31.31■■■□□ 2.6
CHD9Q3L8U1 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
CHD9Q3L8U1 NRG1-221ENST00000614767 762 ntTSL 5 BASIC31.3■■■□□ 2.6
CHD9Q3L8U1 KLF16-203ENST00000592313 508 ntTSL 3 BASIC31.29■■■□□ 2.6
CHD9Q3L8U1 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC31.24■■■□□ 2.59
CHD9Q3L8U1 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
CHD9Q3L8U1 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
CHD9Q3L8U1 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC31.15■■■□□ 2.58
CHD9Q3L8U1 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
CHD9Q3L8U1 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC31.1■■■□□ 2.57
CHD9Q3L8U1 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
CHD9Q3L8U1 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
CHD9Q3L8U1 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
CHD9Q3L8U1 CAHM-201ENST00000604200 896 ntBASIC31.07■■■□□ 2.56
CHD9Q3L8U1 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC31.06■■■□□ 2.56
CHD9Q3L8U1 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC31.01■■■□□ 2.56
CHD9Q3L8U1 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC31.01■■■□□ 2.56
CHD9Q3L8U1 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC31■■■□□ 2.55
CHD9Q3L8U1 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC30.99■■■□□ 2.55
CHD9Q3L8U1 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC30.99■■■□□ 2.55
CHD9Q3L8U1 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
CHD9Q3L8U1 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
CHD9Q3L8U1 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
CHD9Q3L8U1 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
CHD9Q3L8U1 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC30.93■■■□□ 2.54
CHD9Q3L8U1 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
CHD9Q3L8U1 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC30.91■■■□□ 2.54
CHD9Q3L8U1 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
CHD9Q3L8U1 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC30.9■■■□□ 2.54
CHD9Q3L8U1 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
CHD9Q3L8U1 AP006261.1-201ENST00000584783 668 ntBASIC30.89■■■□□ 2.54
CHD9Q3L8U1 AL391121.1-201ENST00000607967 1349 ntBASIC30.89■■■□□ 2.54
CHD9Q3L8U1 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
CHD9Q3L8U1 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC30.88■■■□□ 2.53
CHD9Q3L8U1 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC30.86■■■□□ 2.53
CHD9Q3L8U1 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
CHD9Q3L8U1 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC30.83■■■□□ 2.53
CHD9Q3L8U1 HNRNPLP2-201ENST00000568980 1570 ntBASIC30.82■■■□□ 2.53
CHD9Q3L8U1 AC145285.7-201ENST00000614819 1539 ntBASIC30.82■■■□□ 2.52
CHD9Q3L8U1 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC30.8■■■□□ 2.52
CHD9Q3L8U1 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC30.79■■■□□ 2.52
CHD9Q3L8U1 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
CHD9Q3L8U1 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC30.79■■■□□ 2.52
CHD9Q3L8U1 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
CHD9Q3L8U1 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
CHD9Q3L8U1 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC30.75■■■□□ 2.51
CHD9Q3L8U1 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC30.74■■■□□ 2.51
CHD9Q3L8U1 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC30.74■■■□□ 2.51
CHD9Q3L8U1 MIR7108-201ENST00000614319 87 ntBASIC30.73■■■□□ 2.51
CHD9Q3L8U1 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
CHD9Q3L8U1 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
CHD9Q3L8U1 ABHD17AP4-201ENST00000411545 909 ntBASIC30.69■■■□□ 2.5
Retrieved 100 of 98,524 protein–RNA pairs in 147.6 ms