Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC34.16■■■■□ 3.06
HTTP42858 AC136428.2-201ENST00000563187 214 ntBASIC34.14■■■■□ 3.06
HTTP42858 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC34.14■■■■□ 3.06
HTTP42858 AL031258.1-201ENST00000623562 325 ntBASIC34.13■■■■□ 3.05
HTTP42858 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC34.09■■■■□ 3.05
HTTP42858 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC34.09■■■■□ 3.05
HTTP42858 RARRES2P7-201ENST00000567349 469 ntBASIC34.07■■■■□ 3.04
HTTP42858 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC34.05■■■■□ 3.04
HTTP42858 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC34.02■■■■□ 3.04
HTTP42858 SUZ12P1-203ENST00000578195 985 ntBASIC34.02■■■■□ 3.04
HTTP42858 RPS2P35-201ENST00000443417 897 ntBASIC33.99■■■■□ 3.03
HTTP42858 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC33.99■■■■□ 3.03
HTTP42858 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC33.99■■■■□ 3.03
HTTP42858 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC33.97■■■■□ 3.03
HTTP42858 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC33.88■■■■□ 3.01
HTTP42858 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC33.85■■■■□ 3.01
HTTP42858 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC33.78■■■■□ 3
HTTP42858 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC33.77■■■■□ 3
HTTP42858 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC33.75■■■□□ 2.99
HTTP42858 AC097358.2-201ENST00000607541 1159 ntBASIC33.74■■■□□ 2.99
HTTP42858 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC33.71■■■□□ 2.99
HTTP42858 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC33.68■■■□□ 2.98
HTTP42858 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC33.66■■■□□ 2.98
HTTP42858 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC33.65■■■□□ 2.98
HTTP42858 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC33.63■■■□□ 2.97
HTTP42858 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC33.62■■■□□ 2.97
HTTP42858 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC33.62■■■□□ 2.97
HTTP42858 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC33.6■■■□□ 2.97
HTTP42858 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC33.59■■■□□ 2.97
HTTP42858 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC33.58■■■□□ 2.97
HTTP42858 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC33.58■■■□□ 2.97
HTTP42858 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC33.57■■■□□ 2.96
HTTP42858 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC33.55■■■□□ 2.96
HTTP42858 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC33.53■■■□□ 2.96
HTTP42858 SETD8P1-201ENST00000623146 1180 ntBASIC33.53■■■□□ 2.96
HTTP42858 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC33.52■■■□□ 2.96
HTTP42858 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC33.46■■■□□ 2.95
HTTP42858 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC33.45■■■□□ 2.95
HTTP42858 AL162393.1-201ENST00000437852 946 ntBASIC33.42■■■□□ 2.94
HTTP42858 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC33.39■■■□□ 2.94
HTTP42858 NRG1-221ENST00000614767 762 ntTSL 5 BASIC33.38■■■□□ 2.93
HTTP42858 EBPL-203ENST00000378270 579 ntTSL 2 BASIC33.37■■■□□ 2.93
HTTP42858 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC33.34■■■□□ 2.93
HTTP42858 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC33.34■■■□□ 2.93
HTTP42858 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC33.33■■■□□ 2.93
HTTP42858 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC33.33■■■□□ 2.93
HTTP42858 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC33.29■■■□□ 2.92
HTTP42858 KLF16-203ENST00000592313 508 ntTSL 3 BASIC33.27■■■□□ 2.92
HTTP42858 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC33.27■■■□□ 2.92
HTTP42858 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC33.21■■■□□ 2.91
HTTP42858 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC33.21■■■□□ 2.91
HTTP42858 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC33.19■■■□□ 2.9
HTTP42858 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC33.19■■■□□ 2.9
HTTP42858 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC33.19■■■□□ 2.9
HTTP42858 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC33.19■■■□□ 2.9
HTTP42858 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC33.18■■■□□ 2.9
HTTP42858 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC33.12■■■□□ 2.89
HTTP42858 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC33.11■■■□□ 2.89
HTTP42858 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC33.09■■■□□ 2.89
HTTP42858 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC33.09■■■□□ 2.89
HTTP42858 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC33.07■■■□□ 2.88
HTTP42858 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC33.03■■■□□ 2.88
HTTP42858 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC33.03■■■□□ 2.88
HTTP42858 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC33.02■■■□□ 2.88
HTTP42858 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC33■■■□□ 2.87
HTTP42858 CAHM-201ENST00000604200 896 ntBASIC33■■■□□ 2.87
HTTP42858 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC33■■■□□ 2.87
HTTP42858 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC32.95■■■□□ 2.87
HTTP42858 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC32.94■■■□□ 2.86
HTTP42858 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC32.93■■■□□ 2.86
HTTP42858 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC32.92■■■□□ 2.86
HTTP42858 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC32.9■■■□□ 2.86
HTTP42858 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC32.9■■■□□ 2.86
HTTP42858 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC32.87■■■□□ 2.85
HTTP42858 AP006261.1-201ENST00000584783 668 ntBASIC32.87■■■□□ 2.85
HTTP42858 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC32.86■■■□□ 2.85
HTTP42858 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC32.86■■■□□ 2.85
HTTP42858 MIR7108-201ENST00000614319 87 ntBASIC32.82■■■□□ 2.85
HTTP42858 HNRNPLP2-201ENST00000568980 1570 ntBASIC32.82■■■□□ 2.84
HTTP42858 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC32.82■■■□□ 2.84
HTTP42858 AL391121.1-201ENST00000607967 1349 ntBASIC32.82■■■□□ 2.84
HTTP42858 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
HTTP42858 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC32.77■■■□□ 2.84
HTTP42858 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
HTTP42858 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC32.75■■■□□ 2.83
HTTP42858 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
HTTP42858 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC32.74■■■□□ 2.83
HTTP42858 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC32.73■■■□□ 2.83
HTTP42858 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC32.73■■■□□ 2.83
HTTP42858 ABHD17AP4-201ENST00000411545 909 ntBASIC32.73■■■□□ 2.83
HTTP42858 HLA-V-202ENST00000446817 847 ntBASIC32.71■■■□□ 2.83
HTTP42858 PVT1-219ENST00000523427 938 ntTSL 3 BASIC32.69■■■□□ 2.82
HTTP42858 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC32.69■■■□□ 2.82
HTTP42858 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
HTTP42858 AC145285.7-201ENST00000614819 1539 ntBASIC32.65■■■□□ 2.82
HTTP42858 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC32.63■■■□□ 2.81
HTTP42858 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC32.62■■■□□ 2.81
HTTP42858 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC32.61■■■□□ 2.81
HTTP42858 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC32.61■■■□□ 2.81
HTTP42858 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC32.6■■■□□ 2.81
Retrieved 100 of 98,524 protein–RNA pairs in 13.9 ms