Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC24.41■■□□□ 1.5
ABCA1O95477 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC24.4■■□□□ 1.5
ABCA1O95477 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC24.38■■□□□ 1.49
ABCA1O95477 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC24.36■■□□□ 1.49
ABCA1O95477 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC24.36■■□□□ 1.49
ABCA1O95477 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC24.36■■□□□ 1.49
ABCA1O95477 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC24.36■■□□□ 1.49
ABCA1O95477 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC24.35■■□□□ 1.49
ABCA1O95477 RARRES2P7-201ENST00000567349 469 ntBASIC24.35■■□□□ 1.49
ABCA1O95477 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC24.34■■□□□ 1.49
ABCA1O95477 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC24.34■■□□□ 1.49
ABCA1O95477 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC24.34■■□□□ 1.49
ABCA1O95477 AL031258.1-201ENST00000623562 325 ntBASIC24.34■■□□□ 1.49
ABCA1O95477 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
ABCA1O95477 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC24.31■■□□□ 1.48
ABCA1O95477 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC24.3■■□□□ 1.48
ABCA1O95477 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
ABCA1O95477 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC24.29■■□□□ 1.48
ABCA1O95477 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC24.26■■□□□ 1.47
ABCA1O95477 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC24.25■■□□□ 1.47
ABCA1O95477 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC24.25■■□□□ 1.47
ABCA1O95477 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
ABCA1O95477 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC24.23■■□□□ 1.47
ABCA1O95477 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
ABCA1O95477 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
ABCA1O95477 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC24.19■■□□□ 1.46
ABCA1O95477 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC24.19■■□□□ 1.46
ABCA1O95477 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC24.18■■□□□ 1.46
ABCA1O95477 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
ABCA1O95477 RPS2P35-201ENST00000443417 897 ntBASIC24.1■■□□□ 1.45
ABCA1O95477 AC136428.2-201ENST00000563187 214 ntBASIC24.09■■□□□ 1.45
ABCA1O95477 AC097358.2-201ENST00000607541 1159 ntBASIC24.09■■□□□ 1.45
ABCA1O95477 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
ABCA1O95477 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC24.08■■□□□ 1.45
ABCA1O95477 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC24.08■■□□□ 1.45
ABCA1O95477 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC24.08■■□□□ 1.44
ABCA1O95477 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
ABCA1O95477 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
ABCA1O95477 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC24.05■■□□□ 1.44
ABCA1O95477 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC24.01■■□□□ 1.43
ABCA1O95477 SUZ12P1-203ENST00000578195 985 ntBASIC24.01■■□□□ 1.43
ABCA1O95477 EBPL-203ENST00000378270 579 ntTSL 2 BASIC24■■□□□ 1.43
ABCA1O95477 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC24■■□□□ 1.43
ABCA1O95477 SETD8P1-201ENST00000623146 1180 ntBASIC24■■□□□ 1.43
ABCA1O95477 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
ABCA1O95477 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC23.96■■□□□ 1.43
ABCA1O95477 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC23.95■■□□□ 1.42
ABCA1O95477 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
ABCA1O95477 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC23.91■■□□□ 1.42
ABCA1O95477 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
ABCA1O95477 KLF16-203ENST00000592313 508 ntTSL 3 BASIC23.9■■□□□ 1.42
ABCA1O95477 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
ABCA1O95477 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC23.89■■□□□ 1.42
ABCA1O95477 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC23.87■■□□□ 1.41
ABCA1O95477 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC23.86■■□□□ 1.41
ABCA1O95477 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC23.86■■□□□ 1.41
ABCA1O95477 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
ABCA1O95477 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
ABCA1O95477 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
ABCA1O95477 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC23.84■■□□□ 1.41
ABCA1O95477 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC23.82■■□□□ 1.4
ABCA1O95477 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
ABCA1O95477 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
ABCA1O95477 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
ABCA1O95477 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
ABCA1O95477 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
ABCA1O95477 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
ABCA1O95477 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC23.74■■□□□ 1.39
ABCA1O95477 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC23.71■■□□□ 1.39
ABCA1O95477 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
ABCA1O95477 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC23.7■■□□□ 1.38
ABCA1O95477 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC23.69■■□□□ 1.38
ABCA1O95477 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC23.68■■□□□ 1.38
ABCA1O95477 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
ABCA1O95477 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
ABCA1O95477 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
ABCA1O95477 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
ABCA1O95477 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC23.59■■□□□ 1.37
ABCA1O95477 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC23.59■■□□□ 1.37
ABCA1O95477 AL162393.1-201ENST00000437852 946 ntBASIC23.57■■□□□ 1.36
ABCA1O95477 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC23.57■■□□□ 1.36
ABCA1O95477 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC23.54■■□□□ 1.36
ABCA1O95477 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC23.54■■□□□ 1.36
ABCA1O95477 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
ABCA1O95477 ILK-212ENST00000532063 1617 ntTSL 2 BASIC23.53■■□□□ 1.36
ABCA1O95477 AC145285.7-201ENST00000614819 1539 ntBASIC23.53■■□□□ 1.36
ABCA1O95477 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC23.53■■□□□ 1.36
ABCA1O95477 HNRNPLP2-201ENST00000568980 1570 ntBASIC23.52■■□□□ 1.36
ABCA1O95477 NRG1-221ENST00000614767 762 ntTSL 5 BASIC23.52■■□□□ 1.36
ABCA1O95477 AL391121.1-201ENST00000607967 1349 ntBASIC23.5■■□□□ 1.35
ABCA1O95477 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
ABCA1O95477 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
ABCA1O95477 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC23.49■■□□□ 1.35
ABCA1O95477 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
ABCA1O95477 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
ABCA1O95477 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC23.47■■□□□ 1.35
ABCA1O95477 AP006261.1-201ENST00000584783 668 ntBASIC23.47■■□□□ 1.35
ABCA1O95477 CAHM-201ENST00000604200 896 ntBASIC23.47■■□□□ 1.35
ABCA1O95477 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC23.45■■□□□ 1.34
ABCA1O95477 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC23.45■■□□□ 1.34
Retrieved 100 of 98,524 protein–RNA pairs in 96.9 ms