Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 HTT-208ENST00000510626 14438 ntTSL 1 (best)7.33□□□□□ -1.247e-6■□□□□ 11
LIN28BQ6ZN17 EEF1B2-208ENST00000455150 670 ntTSL 57.32□□□□□ -1.244e-10■□□□□ 11
LIN28BQ6ZN17 NCOR1-205ENST00000395857 9501 ntTSL 5 BASIC7□□□□□ -1.297e-6■□□□□ 11
LIN28BQ6ZN17 HTT-201ENST00000355072 13474 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.337e-6■□□□□ 11
LIN28BQ6ZN17 NCOR1-204ENST00000395851 7950 ntTSL 1 (best) BASIC6.61□□□□□ -1.357e-6■□□□□ 11
LIN28BQ6ZN17 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC6.53□□□□□ -1.367e-6■□□□□ 11
LIN28BQ6ZN17 PKP4-211ENST00000481115 884 ntTSL 56.5□□□□□ -1.377e-6■□□□□ 11
LIN28BQ6ZN17 NCOR1-201ENST00000268712 10720 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.417e-6■□□□□ 11
LIN28BQ6ZN17 ITFG1-205ENST00000563350 1006 ntTSL 35.46□□□□□ -1.547e-6■□□□□ 11
LIN28BQ6ZN17 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC5.34□□□□□ -1.557e-6■□□□□ 11
LIN28BQ6ZN17 EEF1B2-211ENST00000482103 587 ntTSL 25.07□□□□□ -1.64e-10■□□□□ 11
LIN28BQ6ZN17 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.617e-6■□□□□ 11
LIN28BQ6ZN17 SLC44A1-204ENST00000436716 576 ntTSL 54.96□□□□□ -1.627e-6■□□□□ 11
LIN28BQ6ZN17 EIF2AK3-202ENST00000415570 2902 ntTSL 1 (best)4.81□□□□□ -1.647e-6■□□□□ 11
LIN28BQ6ZN17 ITFG1-206ENST00000563730 550 ntTSL 44.57□□□□□ -1.687e-6■□□□□ 11
LIN28BQ6ZN17 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC4.44□□□□□ -1.77e-6■□□□□ 11
LIN28BQ6ZN17 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.727e-6■□□□□ 11
LIN28BQ6ZN17 ITFG1-209ENST00000565940 2663 ntTSL 1 (best)4.3□□□□□ -1.727e-6■□□□□ 11
LIN28BQ6ZN17 BBX-203ENST00000402543 3980 ntTSL 5 BASIC3.87□□□□□ -1.797e-6■□□□□ 11
LIN28BQ6ZN17 EIF2AK3-205ENST00000477083 534 ntTSL 43.87□□□□□ -1.797e-6■□□□□ 11
LIN28BQ6ZN17 FOXN3-217ENST00000557572 513 ntTSL 33.2□□□□□ -1.97e-6■□□□□ 11
LIN28BQ6ZN17 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC22.84■■□□□ 1.252e-9■□□□□ 11
LIN28BQ6ZN17 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.952e-9■□□□□ 11
LIN28BQ6ZN17 CFL1-202ENST00000524553 860 ntTSL 2 BASIC19.22■□□□□ 0.672e-9■□□□□ 11
LIN28BQ6ZN17 CFL1-212ENST00000531413 636 ntTSL 3 BASIC18.87■□□□□ 0.612e-9■□□□□ 11
LIN28BQ6ZN17 CFL1-210ENST00000530945 1509 ntTSL 217.95■□□□□ 0.462e-9■□□□□ 11
LIN28BQ6ZN17 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.442e-9■□□□□ 11
LIN28BQ6ZN17 CFL1-209ENST00000530413 647 ntTSL 1 (best)17.63■□□□□ 0.412e-9■□□□□ 11
LIN28BQ6ZN17 CFL1-214ENST00000534769 758 ntTSL 2 BASIC16.37■□□□□ 0.212e-9■□□□□ 11
LIN28BQ6ZN17 CFL1-206ENST00000527344 962 ntTSL 2 BASIC16.18■□□□□ 0.182e-9■□□□□ 11
LIN28BQ6ZN17 CFL1-213ENST00000532134 855 ntTSL 514.78□□□□□ -0.042e-9■□□□□ 11
LIN28BQ6ZN17 CFL1-207ENST00000527752 766 ntTSL 513.41□□□□□ -0.262e-9■□□□□ 11
LIN28BQ6ZN17 AFP-201ENST00000226359 1914 ntTSL 5 BASIC6.29□□□□□ -1.46e-43■□□□□ 11
LIN28BQ6ZN17 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.416e-43■□□□□ 11
LIN28BQ6ZN17 A2M-203ENST00000462568 546 ntTSL 24.01□□□□□ -1.772e-54■□□□□ 11
LIN28BQ6ZN17 PPIF-202ENST00000448165 821 ntTSL 217.6■□□□□ 0.418e-9■□□□□ 11
LIN28BQ6ZN17 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC16.38■□□□□ 0.211e-8■□□□□ 11
LIN28BQ6ZN17 IGF1-203ENST00000392904 761 ntTSL 5 BASIC16.38■□□□□ 0.211e-8■□□□□ 11
LIN28BQ6ZN17 IGF1-204ENST00000392905 444 ntTSL 516.17■□□□□ 0.181e-8■□□□□ 11
LIN28BQ6ZN17 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.131e-8■□□□□ 11
LIN28BQ6ZN17 TMF1-201ENST00000398559 6849 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.658e-9■□□□□ 11
LIN28BQ6ZN17 TMF1-203ENST00000488010 3399 ntTSL 59.42□□□□□ -0.98e-9■□□□□ 11
LIN28BQ6ZN17 GFPT1-203ENST00000493759 524 ntTSL 53.51□□□□□ -1.858e-9■□□□□ 11
LIN28BQ6ZN17 FN1-214ENST00000460217 804 ntTSL 211.59□□□□□ -0.552e-37■□□□□ 11
LIN28BQ6ZN17 FN1-210ENST00000438981 723 ntTSL 29.03□□□□□ -0.962e-37■□□□□ 11
LIN28BQ6ZN17 ITGA5-211ENST00000552564 4996 ntTSL 212.96□□□□□ -0.335e-10■□□□□ 11
LIN28BQ6ZN17 ACTN1-205ENST00000538545 2813 ntTSL 1 (best) BASIC14.63□□□□□ -0.073e-6■□□□□ 10.9
LIN28BQ6ZN17 ACTN1-202ENST00000376839 2824 ntTSL 2 BASIC12.7□□□□□ -0.383e-6■□□□□ 10.9
LIN28BQ6ZN17 ACTN1-204ENST00000438964 3043 ntTSL 1 (best) BASIC12.32□□□□□ -0.443e-6■□□□□ 10.9
LIN28BQ6ZN17 ACTN1-201ENST00000193403 3779 ntAPPRIS P3 TSL 1 (best) BASIC10.56□□□□□ -0.723e-6■□□□□ 10.9
LIN28BQ6ZN17 ACTN1-203ENST00000394419 3464 ntAPPRIS ALT1 TSL 1 (best) BASIC10.28□□□□□ -0.763e-6■□□□□ 10.9
LIN28BQ6ZN17 ANXA7-201ENST00000372919 2174 ntTSL 1 (best)13.39□□□□□ -0.271e-7■□□□□ 10.9
LIN28BQ6ZN17 ANXA7-202ENST00000372921 2452 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.761e-7■□□□□ 10.9
LIN28BQ6ZN17 NFE2L1-212ENST00000581319 481 ntTSL 311□□□□□ -0.652e-7■□□□□ 10.9
LIN28BQ6ZN17 DYNC1H1-203ENST00000554854 721 ntTSL 39.77□□□□□ -0.854e-9■□□□□ 10.9
LIN28BQ6ZN17 LAMP1-202ENST00000471046 424 ntTSL 315.12■□□□□ 0.012e-9■□□□□ 10.9
LIN28BQ6ZN17 BTK-201ENST00000308731 2579 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.138e-7■□□□□ 10.9
LIN28BQ6ZN17 BTK-202ENST00000372880 2248 ntTSL 2 BASIC7.83□□□□□ -1.168e-7■□□□□ 10.9
LIN28BQ6ZN17 BTK-210ENST00000621635 2767 ntTSL 1 (best) BASIC7.46□□□□□ -1.228e-7■□□□□ 10.9
LIN28BQ6ZN17 BTK-209ENST00000618050 2417 ntTSL 5 BASIC6.94□□□□□ -1.38e-7■□□□□ 10.9
LIN28BQ6ZN17 ITPR2-203ENST00000451599 2577 ntTSL 1 (best)9.33□□□□□ -0.927e-7■□□□□ 10.9
LIN28BQ6ZN17 QPRT-201ENST00000219771 913 ntTSL 220.65■□□□□ 0.94e-16■□□□□ 10.9
LIN28BQ6ZN17 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.474e-16■□□□□ 10.9
LIN28BQ6ZN17 QPRT-203ENST00000562473 579 ntTSL 3 BASIC17.89■□□□□ 0.454e-16■□□□□ 10.9
LIN28BQ6ZN17 MSMO1-205ENST00000507013 973 ntTSL 224.23■■□□□ 1.473e-7■□□□□ 10.9
LIN28BQ6ZN17 HLA-B-250ENST00000434333 863 nt23.06■■□□□ 1.283e-7■□□□□ 10.9
LIN28BQ6ZN17 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC18.63■□□□□ 0.573e-7■□□□□ 10.9
LIN28BQ6ZN17 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC16.7■□□□□ 0.263e-7■□□□□ 10.9
LIN28BQ6ZN17 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC16.67■□□□□ 0.263e-7■□□□□ 10.9
LIN28BQ6ZN17 MSI2-207ENST00000579205 500 ntTSL 415.85■□□□□ 0.133e-7■□□□□ 10.9
LIN28BQ6ZN17 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.073e-7■□□□□ 10.9
LIN28BQ6ZN17 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.13e-7■□□□□ 10.9
LIN28BQ6ZN17 IGF1R-216ENST00000560972 310 ntTSL 1 (best)12.73□□□□□ -0.373e-7■□□□□ 10.9
LIN28BQ6ZN17 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC5.38□□□□□ -1.553e-7■□□□□ 10.9
LIN28BQ6ZN17 MSI2-212ENST00000579590 452 ntTSL 53.83□□□□□ -1.83e-7■□□□□ 10.9
LIN28BQ6ZN17 MSI2-215ENST00000582453 496 ntTSL 33.1□□□□□ -1.913e-7■□□□□ 10.9
LIN28BQ6ZN17 MTTP-208ENST00000511045 3154 ntTSL 2 BASIC8.4□□□□□ -1.061e-6■□□□□ 10.9
LIN28BQ6ZN17 COX7A2-208ENST00000509698 480 ntAPPRIS ALT2 TSL 3 BASIC12.15□□□□□ -0.465e-7■□□□□ 10.9
LIN28BQ6ZN17 COX7A2-202ENST00000370089 773 ntAPPRIS P2 TSL 1 (best) BASIC10.36□□□□□ -0.755e-7■□□□□ 10.9
LIN28BQ6ZN17 COX7A2-201ENST00000370081 914 ntAPPRIS P2 TSL 3 BASIC9.74□□□□□ -0.855e-7■□□□□ 10.9
LIN28BQ6ZN17 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC4.33□□□□□ -1.725e-7■□□□□ 10.9
LIN28BQ6ZN17 COX7A2-204ENST00000459637 501 ntTSL 23.43□□□□□ -1.865e-7■□□□□ 10.9
LIN28BQ6ZN17 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC0.94□□□□□ -2.265e-7■□□□□ 10.9
LIN28BQ6ZN17 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.357e-6■□□□□ 10.9
LIN28BQ6ZN17 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.027e-6■□□□□ 10.9
LIN28BQ6ZN17 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC25.97■■□□□ 1.757e-6■□□□□ 10.9
LIN28BQ6ZN17 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC25.88■■□□□ 1.737e-6■□□□□ 10.9
LIN28BQ6ZN17 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC25.65■■□□□ 1.77e-6■□□□□ 10.9
LIN28BQ6ZN17 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.527e-8■□□□□ 10.9
LIN28BQ6ZN17 SEPT6-206ENST00000460411 1393 ntTSL 224.08■■□□□ 1.457e-6■□□□□ 10.9
LIN28BQ6ZN17 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC23.75■■□□□ 1.392e-7■□□□□ 10.9
LIN28BQ6ZN17 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC23■■□□□ 1.274e-6■□□□□ 10.9
LIN28BQ6ZN17 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC22.44■■□□□ 1.187e-6■□□□□ 10.9
LIN28BQ6ZN17 TMEM256-PLSCR3-203ENST00000571125 951 ntAPPRIS ALT2 TSL 522.3■■□□□ 1.164e-6■□□□□ 10.9
LIN28BQ6ZN17 TAOK2-206ENST00000570844 1721 ntTSL 222.29■■□□□ 1.167e-6■□□□□ 10.9
LIN28BQ6ZN17 ETF1-206ENST00000507939 713 ntTSL 521.99■■□□□ 1.117e-6■□□□□ 10.9
LIN28BQ6ZN17 TMEM256-PLSCR3-202ENST00000570600 1526 ntAPPRIS ALT2 TSL 221.75■■□□□ 1.074e-6■□□□□ 10.9
LIN28BQ6ZN17 CCDC43-204ENST00000588687 721 ntTSL 221.39■■□□□ 1.017e-6■□□□□ 10.9
LIN28BQ6ZN17 MECP2-216ENST00000627864 581 ntTSL 320.66■□□□□ 0.97e-6■□□□□ 10.9
LIN28BQ6ZN17 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.877e-6■□□□□ 10.9
Retrieved 100 of 21,972 protein–RNA pairs in 413.3 ms