RNA–Protein interactions for RNA: ENST00000488010.5

TMF1-203, Transcript of TATA element modulatory factor 1, humanhuman

TSL 5

Gene TMF1, Length 3,399 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMF1-203ENST00000488010 NISCHQ9Y2I1 1504 aa19.56■□□□□ 0.72
TMF1-203ENST00000488010 SHROOM4Q9ULL8 1493 aa17.35■□□□□ 0.37
TMF1-203ENST00000488010 SUPT5HO00267 1087 aaKnown RBP17.17■□□□□ 0.34
TMF1-203ENST00000488010 HRCP23327 699 aa16.7■□□□□ 0.26
TMF1-203ENST00000488010 DCAF8L2P0C7V8 631 aa16.67■□□□□ 0.26
TMF1-203ENST00000488010 MYO15BQ96JP2 1530 aa16.65■□□□□ 0.26
TMF1-203ENST00000488010 CHIC1Q5VXU3 224 aa16.65■□□□□ 0.26
TMF1-203ENST00000488010 PCGF6Q9BYE7 350 aa16.64■□□□□ 0.25
TMF1-203ENST00000488010 ZCCHC6Q5VYS8 1495 aaKnown RBP16.57■□□□□ 0.24
TMF1-203ENST00000488010 PPARGC1BQ86YN6 1023 aaKnown RBP16.49■□□□□ 0.23
TMF1-203ENST00000488010 LOC105371045A0A1W2PR82 267 aa16.33■□□□□ 0.2
TMF1-203ENST00000488010 CCDC180Q9P1Z9 1646 aa16.3■□□□□ 0.2
TMF1-203ENST00000488010 DCAF1Q9Y4B6 1507 aa16.14■□□□□ 0.17
TMF1-203ENST00000488010 TRIM26Q12899 539 aaPredicted RBP16.07■□□□□ 0.16
TMF1-203ENST00000488010 EHMT2Q96KQ7 1210 aa15.95■□□□□ 0.14
TMF1-203ENST00000488010 FAM9AQ8IZU1 332 aaPredicted RBP15.93■□□□□ 0.14
TMF1-203ENST00000488010 TRIM41Q8WV44 630 aa15.86■□□□□ 0.13
TMF1-203ENST00000488010 ZEB1P37275 1124 aaPredicted RBP15.81■□□□□ 0.12
TMF1-203ENST00000488010 ABCC9O60706 1549 aa15.69■□□□□ 0.1
TMF1-203ENST00000488010 RSF1Q96T23 1441 aaPredicted RBP15.68■□□□□ 0.1
TMF1-203ENST00000488010 SCAF1Q9H7N4 1312 aaKnown RBP15.66■□□□□ 0.1
TMF1-203ENST00000488010 SCRIBQ14160 1630 aa15.65■□□□□ 0.1
TMF1-203ENST00000488010 RB1CC1Q8TDY2 1594 aa15.59■□□□□ 0.09
TMF1-203ENST00000488010 PELP1Q8IZL8 1130 aaKnown RBP15.59■□□□□ 0.09
TMF1-203ENST00000488010 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.53■□□□□ 0.08
TMF1-203ENST00000488010 CCER1Q8TC90 406 aaPredicted RBP15.5■□□□□ 0.07
TMF1-203ENST00000488010 TTBK1Q5TCY1 1321 aaPredicted RBP15.49■□□□□ 0.07
TMF1-203ENST00000488010 CECR2Q9BXF3 1484 aa15.38■□□□□ 0.05
TMF1-203ENST00000488010 NEUROD1Q13562 356 aa15.37■□□□□ 0.05
TMF1-203ENST00000488010 ACIN1Q9UKV3 1341 aaKnown RBP15.36■□□□□ 0.05
TMF1-203ENST00000488010 DIEXFQ68CQ4 756 aaKnown RBP15.32■□□□□ 0.04
TMF1-203ENST00000488010 MROH2BQ7Z745 1585 aa15.31■□□□□ 0.04
TMF1-203ENST00000488010 GTF3C3Q9Y5Q9 886 aa15.28■□□□□ 0.04
TMF1-203ENST00000488010 CENPBP07199 599 aaPredicted RBP15.25■□□□□ 0.03
TMF1-203ENST00000488010 WIZO95785 1651 aa15.25■□□□□ 0.03
TMF1-203ENST00000488010 YTHDC1Q96MU7 727 aaKnown RBP15.17■□□□□ 0.02
TMF1-203ENST00000488010 UBTFP17480 764 aaKnown RBP15.13■□□□□ 0.01
TMF1-203ENST00000488010 ABCC8Q09428 1581 aa15.11■□□□□ 0.01
TMF1-203ENST00000488010 CEP162Q5TB80 1403 aa15.1■□□□□ 0.01
TMF1-203ENST00000488010 CCDC88BA6NC98 1476 aa15.09■□□□□ 0.01
TMF1-203ENST00000488010 NACADO15069 1562 aa15.09■□□□□ 0.01
TMF1-203ENST00000488010 BAZ1AQ9NRL2 1556 aaPredicted RBP15.06■□□□□ 0
TMF1-203ENST00000488010 ZNF316A6NFI3 1004 aaPredicted RBP15.06■□□□□ 0
TMF1-203ENST00000488010 SOGA1O94964 1423 aa15.04■□□□□ -0
TMF1-203ENST00000488010 HNRNPUL2Q1KMD3 747 aaKnown RBP15.03■□□□□ -0
TMF1-203ENST00000488010 WRNQ14191 1432 aaPredicted RBP eCLIP15.01□□□□□ -0.01
TMF1-203ENST00000488010 EIF4G1Q04637 1599 aaKnown RBP15□□□□□ -0.01
TMF1-203ENST00000488010 CSRNP3Q8WYN3 585 aa14.99□□□□□ -0.01
TMF1-203ENST00000488010 TNIKQ9UKE5 1360 aa14.97□□□□□ -0.01
TMF1-203ENST00000488010 RUSC2Q8N2Y8 1516 aa14.96□□□□□ -0.02
TMF1-203ENST00000488010 MIER1Q8N108 512 aa14.95□□□□□ -0.02
TMF1-203ENST00000488010 RANGAP1P46060 587 aaPredicted RBP14.95□□□□□ -0.02
TMF1-203ENST00000488010 TOP2AP11388 1531 aaKnown RBP14.91□□□□□ -0.02
TMF1-203ENST00000488010 SMARCA2P51531 1590 aa14.87□□□□□ -0.03
TMF1-203ENST00000488010 MYT1Q01538 1121 aa14.85□□□□□ -0.03
TMF1-203ENST00000488010 APLP2Q06481 763 aa14.85□□□□□ -0.03
TMF1-203ENST00000488010 GOLGA3Q08378 1498 aa14.85□□□□□ -0.03
TMF1-203ENST00000488010 SMARCA4P51532 1647 aa14.83□□□□□ -0.04
TMF1-203ENST00000488010 EEA1Q15075 1411 aa14.83□□□□□ -0.04
TMF1-203ENST00000488010 PABPN1Q86U42 306 aaKnown RBP eCLIP14.77□□□□□ -0.04
TMF1-203ENST00000488010 CLIP1P30622 1438 aa14.76□□□□□ -0.05
TMF1-203ENST00000488010 CEP164Q9UPV0 1460 aa14.7□□□□□ -0.06
TMF1-203ENST00000488010 VPS8Q8N3P4 1428 aa14.67□□□□□ -0.06
TMF1-203ENST00000488010 SYNJ1O43426 1573 aa14.63□□□□□ -0.07
TMF1-203ENST00000488010 RAPGEF2Q9Y4G8 1499 aa14.63□□□□□ -0.07
TMF1-203ENST00000488010 KIF21BO75037 1637 aa14.59□□□□□ -0.07
TMF1-203ENST00000488010 ITGAEP38570 1179 aa14.58□□□□□ -0.08
TMF1-203ENST00000488010 UNC13AQ9UPW8 1703 aa14.58□□□□□ -0.08
TMF1-203ENST00000488010 SUPT16HQ9Y5B9 1047 aaKnown RBP14.57□□□□□ -0.08
TMF1-203ENST00000488010 DHX57Q6P158 1386 aaKnown RBP14.55□□□□□ -0.08
TMF1-203ENST00000488010 KANK4Q5T7N3 995 aaPredicted RBP14.54□□□□□ -0.08
TMF1-203ENST00000488010 BAZ1BQ9UIG0 1483 aaKnown RBP14.51□□□□□ -0.09
TMF1-203ENST00000488010 CLSPNQ9HAW4 1339 aa14.47□□□□□ -0.09
TMF1-203ENST00000488010 BCANQ96GW7 911 aa14.47□□□□□ -0.09
TMF1-203ENST00000488010 KCNH8Q96L42 1107 aa14.45□□□□□ -0.1
TMF1-203ENST00000488010 TSHZ2Q9NRE2 1034 aa14.42□□□□□ -0.1
TMF1-203ENST00000488010 ATAD2BQ9ULI0 1458 aa14.41□□□□□ -0.1
TMF1-203ENST00000488010 BICRAQ9NZM4 1560 aa14.41□□□□□ -0.1
TMF1-203ENST00000488010 ARAP1Q96P48 1450 aa14.4□□□□□ -0.1
TMF1-203ENST00000488010 PEG3Q9GZU2 1588 aa14.38□□□□□ -0.11
TMF1-203ENST00000488010 CCNB3Q8WWL7 1395 aa14.36□□□□□ -0.11
TMF1-203ENST00000488010 DDX10Q13206 875 aaKnown RBP14.35□□□□□ -0.11
TMF1-203ENST00000488010 TOP2BQ02880 1626 aa14.34□□□□□ -0.11
TMF1-203ENST00000488010 FKBP8Q14318 412 aa14.33□□□□□ -0.12
TMF1-203ENST00000488010 PRXQ9BXM0 1461 aa14.32□□□□□ -0.12
TMF1-203ENST00000488010 RRBP1Q9P2E9 1410 aaKnown RBP14.32□□□□□ -0.12
TMF1-203ENST00000488010 HIRIP3Q9BW71 556 aaPredicted RBP14.31□□□□□ -0.12
TMF1-203ENST00000488010 RAB3GAP2Q9H2M9 1393 aa14.3□□□□□ -0.12
TMF1-203ENST00000488010 SIN3AQ96ST3 1273 aa14.3□□□□□ -0.12
TMF1-203ENST00000488010 ATP1B4Q9UN42 357 aaPredicted RBP14.3□□□□□ -0.12
TMF1-203ENST00000488010 FAM50AQ14320 339 aaKnown RBP14.3□□□□□ -0.12
TMF1-203ENST00000488010 ERICH3Q5RHP9 1530 aa14.29□□□□□ -0.12
TMF1-203ENST00000488010 ANP32EQ9BTT0 268 aa14.29□□□□□ -0.12
TMF1-203ENST00000488010 KIF27Q86VH2 1401 aa14.27□□□□□ -0.13
TMF1-203ENST00000488010 TRIM52Q96A61 297 aa14.25□□□□□ -0.13
TMF1-203ENST00000488010 NEFLP07196 543 aa14.25□□□□□ -0.13
TMF1-203ENST00000488010 ARHGAP35Q9NRY4 1499 aa14.24□□□□□ -0.13
TMF1-203ENST00000488010 P3H3Q8IVL6 736 aa14.23□□□□□ -0.13
TMF1-203ENST00000488010 BIVM-ERCC5R4GMW8 1640 aa14.22□□□□□ -0.13
TMF1-203ENST00000488010 CUX2O14529 1486 aa14.21□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms