RNA–Protein interactions for RNA: ENST00000582453.5

MSI2-215, Transcript of musashi RNA binding protein 2, human

TSL 3

Gene MSI2, Length 496 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MSI2-215	ENST00000582453	AEBP2	Q6ZN18	517 aa	Predicted RBP	17.22	■□□□□ 0.35
MSI2-215	ENST00000582453	CHIC1	Q5VXU3	224 aa		16.83	■□□□□ 0.28
MSI2-215	ENST00000582453	PHF23	Q9BUL5	403 aa	Predicted RBP	14.76	□□□□□ -0.05
MSI2-215	ENST00000582453	SENP3	Q9H4L4	574 aa	Predicted RBP	14.67	□□□□□ -0.06
MSI2-215	ENST00000582453	PLPPR3	Q6T4P5	718 aa		13.67	□□□□□ -0.22
MSI2-215	ENST00000582453	FOXD1	Q16676	465 aa		13.58	□□□□□ -0.24
MSI2-215	ENST00000582453	PPP6R1	Q9UPN7	881 aa		13.03	□□□□□ -0.32
MSI2-215	ENST00000582453	ADRA2B	P18089	450 aa		13.01	□□□□□ -0.33
MSI2-215	ENST00000582453	PIAS4	Q8N2W9	510 aa	Predicted RBP	12.81	□□□□□ -0.36
MSI2-215	ENST00000582453	MSH5	O43196	834 aa		12.58	□□□□□ -0.4
MSI2-215	ENST00000582453	PPP4R3CP	Q6ZMV5	832 aa		12.02	□□□□□ -0.49
MSI2-215	ENST00000582453	SCAF1	Q9H7N4	1312 aa	Known RBP	11.97	□□□□□ -0.49
MSI2-215	ENST00000582453	MAPK8IP2	Q13387	824 aa	Predicted RBP	11.81	□□□□□ -0.52
MSI2-215	ENST00000582453	NCBP3	Q53F19	620 aa	Known RBP	11.73	□□□□□ -0.53
MSI2-215	ENST00000582453	CNKSR2	Q8WXI2	1034 aa		11.71	□□□□□ -0.53
MSI2-215	ENST00000582453	KCNA4	P22459	653 aa		11.69	□□□□□ -0.54
MSI2-215	ENST00000582453	DMRT2	Q9Y5R5	561 aa		11.69	□□□□□ -0.54
MSI2-215	ENST00000582453	NPM3	O75607	178 aa	Known RBP	11.52	□□□□□ -0.57
MSI2-215	ENST00000582453	POTED	Q86YR6	584 aa		11.52	□□□□□ -0.57
MSI2-215	ENST00000582453	RNF216	Q9NWF9	866 aa	Predicted RBP	11.48	□□□□□ -0.57
MSI2-215	ENST00000582453	HOXD11	P31277	338 aa	Predicted RBP	11.45	□□□□□ -0.58
MSI2-215	ENST00000582453	DNAJC5B	Q9UF47	199 aa		11.26	□□□□□ -0.61
MSI2-215	ENST00000582453	DCAF8L1	A6NGE4	600 aa		11.16	□□□□□ -0.62
MSI2-215	ENST00000582453	SLC4A1AP	Q9BWU0	796 aa	Known RBP	11.14	□□□□□ -0.63
MSI2-215	ENST00000582453	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	10.89	□□□□□ -0.67
MSI2-215	ENST00000582453	SLC4A2	P04920	1241 aa		10.88	□□□□□ -0.67
MSI2-215	ENST00000582453	FOXD4L1	Q9NU39	408 aa		10.8	□□□□□ -0.68
MSI2-215	ENST00000582453	EHMT2	Q96KQ7	1210 aa		10.76	□□□□□ -0.69
MSI2-215	ENST00000582453	ZBTB22	O15209	634 aa		10.75	□□□□□ -0.69
MSI2-215	ENST00000582453	RNF39	Q9H2S5	420 aa		10.75	□□□□□ -0.69
MSI2-215	ENST00000582453		U3KPZ7	1027 aa	Predicted RBP	10.71	□□□□□ -0.69
MSI2-215	ENST00000582453	MYCN	P04198	464 aa	Predicted RBP	10.67	□□□□□ -0.7
MSI2-215	ENST00000582453	CSRNP3	Q8WYN3	585 aa		10.67	□□□□□ -0.7
MSI2-215	ENST00000582453	C1QBP	Q07021	282 aa	Known RBP	10.65	□□□□□ -0.7
MSI2-215	ENST00000582453	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	10.61	□□□□□ -0.71
MSI2-215	ENST00000582453	HNRNPUL2	Q1KMD3	747 aa	Known RBP	10.61	□□□□□ -0.71
MSI2-215	ENST00000582453	SAMD1	Q6SPF0	538 aa	Predicted RBP	10.56	□□□□□ -0.72
MSI2-215	ENST00000582453	APLP2	Q06481	763 aa		10.52	□□□□□ -0.73
MSI2-215	ENST00000582453	CACNB1	Q02641	598 aa	Predicted RBP	10.49	□□□□□ -0.73
MSI2-215	ENST00000582453	ATXN8OS	P0DMR3	200 aa		10.45	□□□□□ -0.74
MSI2-215	ENST00000582453	SPINK5	Q9NQ38	1064 aa	Predicted RBP	10.4	□□□□□ -0.74
MSI2-215	ENST00000582453	CAPN15	O75808	1086 aa		10.37	□□□□□ -0.75
MSI2-215	ENST00000582453	ZNF219	Q9P2Y4	722 aa	Predicted RBP	10.35	□□□□□ -0.75
MSI2-215	ENST00000582453	ATF5	Q9Y2D1	282 aa	Predicted RBP	10.34	□□□□□ -0.75
MSI2-215	ENST00000582453	TRH	P20396	242 aa	Predicted RBP	10.31	□□□□□ -0.76
MSI2-215	ENST00000582453	DSG3	P32926	999 aa		10.21	□□□□□ -0.77
MSI2-215	ENST00000582453	ABCB7	O75027	752 aa		10.16	□□□□□ -0.78
MSI2-215	ENST00000582453	POLA2	Q14181	598 aa		10.15	□□□□□ -0.78
MSI2-215	ENST00000582453	ZBTB12	Q9Y330	459 aa	Predicted RBP	10.03	□□□□□ -0.8
MSI2-215	ENST00000582453	FBLN2	P98095	1184 aa		9.96	□□□□□ -0.82
MSI2-215	ENST00000582453	MKRN4P	Q13434	485 aa	Predicted RBP	9.9	□□□□□ -0.82
MSI2-215	ENST00000582453	OSCAR	Q8IYS5	282 aa		9.8	□□□□□ -0.84
MSI2-215	ENST00000582453	RBM42	Q9BTD8	480 aa	Known RBP	9.77	□□□□□ -0.85
MSI2-215	ENST00000582453	SPDYE2B	A6NHP3	402 aa		9.74	□□□□□ -0.85
MSI2-215	ENST00000582453	SPDYE6	P0CI01	402 aa		9.74	□□□□□ -0.85
MSI2-215	ENST00000582453	SPDYE2	Q495Y8	402 aa		9.74	□□□□□ -0.85
MSI2-215	ENST00000582453	SPDYE4	A6NLX3	237 aa		9.68	□□□□□ -0.86
MSI2-215	ENST00000582453	ZNF692	Q9BU19	519 aa	Predicted RBP	9.68	□□□□□ -0.86
MSI2-215	ENST00000582453	FKBP8	Q14318	412 aa		9.65	□□□□□ -0.86
MSI2-215	ENST00000582453	SSUH2	Q9Y2M2	353 aa		9.65	□□□□□ -0.86
MSI2-215	ENST00000582453	AKT1S1	Q96B36	256 aa		9.63	□□□□□ -0.87
MSI2-215	ENST00000582453	PABPN1	Q86U42	306 aa	Known RBP eCLIP	9.54	□□□□□ -0.88
MSI2-215	ENST00000582453	PROM2	Q8N271	834 aa		9.54	□□□□□ -0.88
MSI2-215	ENST00000582453	REM2	Q8IYK8	340 aa	Predicted RBP	9.52	□□□□□ -0.89
MSI2-215	ENST00000582453	SPDYE1	Q8NFV5	336 aa	Predicted RBP	9.46	□□□□□ -0.9
MSI2-215	ENST00000582453	STAG3	Q9UJ98	1225 aa		9.42	□□□□□ -0.9
MSI2-215	ENST00000582453	PITPNM1	O00562	1244 aa		9.41	□□□□□ -0.9
MSI2-215	ENST00000582453	CLEC11A	Q9Y240	323 aa		9.38	□□□□□ -0.91
MSI2-215	ENST00000582453	FBXO3	Q9UK99	471 aa		9.37	□□□□□ -0.91
MSI2-215	ENST00000582453	CHRDL2	Q6WN34	429 aa		9.35	□□□□□ -0.91
MSI2-215	ENST00000582453	PRR29	P0C7W0	189 aa		9.3	□□□□□ -0.92
MSI2-215	ENST00000582453	FXR2	P51116	673 aa	Known RBP eCLIP	9.25	□□□□□ -0.93
MSI2-215	ENST00000582453	VASP	P50552	380 aa	Predicted RBP	9.21	□□□□□ -0.94
MSI2-215	ENST00000582453	PIP4P2	Q8N4L2	257 aa		9.21	□□□□□ -0.94
MSI2-215	ENST00000582453	MIER1	Q8N108	512 aa		9.18	□□□□□ -0.94
MSI2-215	ENST00000582453	PLCD3	Q8N3E9	789 aa		9.18	□□□□□ -0.94
MSI2-215	ENST00000582453	PLEKHG5	O94827	1062 aa		9.17	□□□□□ -0.94
MSI2-215	ENST00000582453	PRKAR2A	P13861	404 aa	Known RBP	9.17	□□□□□ -0.94
MSI2-215	ENST00000582453	CREBZF	Q9NS37	354 aa		9.17	□□□□□ -0.94
MSI2-215	ENST00000582453	CHADL	Q6NUI6	762 aa		9.14	□□□□□ -0.95
MSI2-215	ENST00000582453	ZBTB47	Q9UFB7	747 aa	Predicted RBP	9.11	□□□□□ -0.95
MSI2-215	ENST00000582453	MNX1	P50219	401 aa	Predicted RBP	9.08	□□□□□ -0.96
MSI2-215	ENST00000582453	POTEH	Q6S545	545 aa		9.08	□□□□□ -0.96
MSI2-215	ENST00000582453	FARP1	Q9Y4F1	1045 aa	Predicted RBP	9.08	□□□□□ -0.96
MSI2-215	ENST00000582453	NPM1	P06748	294 aa	Known RBP eCLIP	9.06	□□□□□ -0.96
MSI2-215	ENST00000582453	IFNLR1	Q8IU57	520 aa	Predicted RBP	9.06	□□□□□ -0.96
MSI2-215	ENST00000582453	KLHL34	Q8N239	644 aa		9.05	□□□□□ -0.96
MSI2-215	ENST00000582453	SPOCK2	Q92563	424 aa		8.98	□□□□□ -0.97
MSI2-215	ENST00000582453	NUBP1	P53384	320 aa		8.95	□□□□□ -0.98
MSI2-215	ENST00000582453	C19orf67	A6NJJ6	358 aa		8.93	□□□□□ -0.98
MSI2-215	ENST00000582453	HAX1	O00165	279 aa		8.92	□□□□□ -0.98
MSI2-215	ENST00000582453	PAK3	O75914	559 aa	Predicted RBP	8.91	□□□□□ -0.98
MSI2-215	ENST00000582453	CD44	P16070	742 aa	Known RBP	8.91	□□□□□ -0.98
MSI2-215	ENST00000582453	RASEF	Q8IZ41	740 aa		8.91	□□□□□ -0.98
MSI2-215	ENST00000582453	FAM212A	Q96EL1	285 aa		8.9	□□□□□ -0.98
MSI2-215	ENST00000582453	GSE1	Q14687	1217 aa		8.87	□□□□□ -0.99
MSI2-215	ENST00000582453	TSPYL2	Q9H2G4	693 aa	Predicted RBP	8.86	□□□□□ -0.99
MSI2-215	ENST00000582453	DCAF8	Q5TAQ9	597 aa		8.85	□□□□□ -0.99
MSI2-215	ENST00000582453	ZRANB1	Q9UGI0	708 aa		8.85	□□□□□ -0.99
MSI2-215	ENST00000582453	CIZ1	Q9ULV3	898 aa	Predicted RBP	8.83	□□□□□ -1

Retrieved 100 of 20,778 RNA–protein pairs in 24 ms