RNA–Protein interactions for RNA: ENST00000588687.5

CCDC43-204, Transcript of coiled-coil domain containing 43, humanhuman

TSL 2

Gene CCDC43, Length 721 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43-204ENST00000588687 NISCHQ9Y2I1 1504 aa46.91■■■■■ 5.1
CCDC43-204ENST00000588687 CCDC180Q9P1Z9 1646 aa42.23■■■■■ 4.35
CCDC43-204ENST00000588687 ABCC9O60706 1549 aa42.21■■■■■ 4.35
CCDC43-204ENST00000588687 RB1CC1Q8TDY2 1594 aa40.16■■■■■ 4.02
CCDC43-204ENST00000588687 NACADO15069 1562 aa39.88■■■■□ 3.97
CCDC43-204ENST00000588687 DNAJC5BQ9UF47 199 aa39.71■■■■□ 3.95
CCDC43-204ENST00000588687 UNC13AQ9UPW8 1703 aa39.39■■■■□ 3.9
CCDC43-204ENST00000588687 MYO15BQ96JP2 1530 aa39.36■■■■□ 3.89
CCDC43-204ENST00000588687 DCAF8L2P0C7V8 631 aa39.29■■■■□ 3.88
CCDC43-204ENST00000588687 PABPN1Q86U42 306 aaKnown RBP eCLIP39.18■■■■□ 3.86
CCDC43-204ENST00000588687 BICRAQ9NZM4 1560 aa39.12■■■■□ 3.85
CCDC43-204ENST00000588687 ZCCHC6Q5VYS8 1495 aaKnown RBP38.92■■■■□ 3.82
CCDC43-204ENST00000588687 DCAF1Q9Y4B6 1507 aa38.8■■■■□ 3.8
CCDC43-204ENST00000588687 SHROOM4Q9ULL8 1493 aa38.55■■■■□ 3.76
CCDC43-204ENST00000588687 SCRIBQ14160 1630 aa38.39■■■■□ 3.74
CCDC43-204ENST00000588687 CC2D2AQ9P2K1 1620 aa38.2■■■■□ 3.7
CCDC43-204ENST00000588687 EIF4G1Q04637 1599 aaKnown RBP38.1■■■■□ 3.69
CCDC43-204ENST00000588687 CECR2Q9BXF3 1484 aa38.04■■■■□ 3.68
CCDC43-204ENST00000588687 NCAPD3P42695 1498 aa36.81■■■■□ 3.48
CCDC43-204ENST00000588687 ATAD2BQ9ULI0 1458 aa36.68■■■■□ 3.46
CCDC43-204ENST00000588687 SMARCA4P51532 1647 aa36.66■■■■□ 3.46
CCDC43-204ENST00000588687 HMGXB3Q12766 1538 aa36.59■■■■□ 3.45
CCDC43-204ENST00000588687 SMARCA2P51531 1590 aa36.56■■■■□ 3.44
CCDC43-204ENST00000588687 DNAJC5Q9H3Z4 198 aa36.5■■■■□ 3.43
CCDC43-204ENST00000588687 CUX2O14529 1486 aa36.48■■■■□ 3.43
CCDC43-204ENST00000588687 BAZ1AQ9NRL2 1556 aaPredicted RBP36.4■■■■□ 3.42
CCDC43-204ENST00000588687 ERCC6Q03468 1493 aa36.39■■■■□ 3.42
CCDC43-204ENST00000588687 PEG3Q9GZU2 1588 aa36.36■■■■□ 3.41
CCDC43-204ENST00000588687 BAZ1BQ9UIG0 1483 aaKnown RBP36.28■■■■□ 3.4
CCDC43-204ENST00000588687 NESP48681 1621 aa36.27■■■■□ 3.4
CCDC43-204ENST00000588687 MROH2BQ7Z745 1585 aa36.15■■■■□ 3.38
CCDC43-204ENST00000588687 THOC2Q8NI27 1593 aaKnown RBP36.04■■■■□ 3.36
CCDC43-204ENST00000588687 LAMC3Q9Y6N6 1575 aa36.02■■■■□ 3.36
CCDC43-204ENST00000588687 KIF21AQ7Z4S6 1674 aa35.86■■■■□ 3.33
CCDC43-204ENST00000588687 PDS5BQ9NTI5 1447 aa35.71■■■■□ 3.31
CCDC43-204ENST00000588687 WIZO95785 1651 aa35.71■■■■□ 3.31
CCDC43-204ENST00000588687 CADPSQ9ULU8 1353 aa35.62■■■■□ 3.29
CCDC43-204ENST00000588687 MRC2Q9UBG0 1479 aa35.48■■■■□ 3.27
CCDC43-204ENST00000588687 WDR62O43379 1518 aa35.47■■■■□ 3.27
CCDC43-204ENST00000588687 RSF1Q96T23 1441 aaPredicted RBP35.32■■■■□ 3.25
CCDC43-204ENST00000588687 CEP164Q9UPV0 1460 aa35.29■■■■□ 3.24
CCDC43-204ENST00000588687 TOP2AP11388 1531 aaKnown RBP35.27■■■■□ 3.24
CCDC43-204ENST00000588687 CFTRP13569 1480 aa35.26■■■■□ 3.23
CCDC43-204ENST00000588687 FANCD2Q9BXW9 1451 aa35.25■■■■□ 3.23
CCDC43-204ENST00000588687 URB2Q14146 1524 aaKnown RBP35.03■■■■□ 3.2
CCDC43-204ENST00000588687 PRDM2Q13029 1718 aa34.98■■■■□ 3.19
CCDC43-204ENST00000588687 CCDC88BA6NC98 1476 aa34.8■■■■□ 3.16
CCDC43-204ENST00000588687 TRIM41Q8WV44 630 aa34.73■■■■□ 3.15
CCDC43-204ENST00000588687 OSCARQ8IYS5 282 aa34.61■■■■□ 3.13
CCDC43-204ENST00000588687 IFT140Q96RY7 1462 aa34.6■■■■□ 3.13
CCDC43-204ENST00000588687 TOPBP1Q92547 1522 aa34.6■■■■□ 3.13
CCDC43-204ENST00000588687 ZNF608Q9ULD9 1512 aaPredicted RBP34.6■■■■□ 3.13
CCDC43-204ENST00000588687 DNMBPQ6XZF7 1577 aa34.48■■■■□ 3.11
CCDC43-204ENST00000588687 EIF4G3O43432 1585 aaKnown RBP34.45■■■■□ 3.1
CCDC43-204ENST00000588687 ABCC8Q09428 1581 aa34.45■■■■□ 3.1
CCDC43-204ENST00000588687 RIMBP3CA6NJZ7 1639 aa34.38■■■■□ 3.09
CCDC43-204ENST00000588687 RIMBP3BA6NNM3 1639 aa34.38■■■■□ 3.09
CCDC43-204ENST00000588687 RIMBP3Q9UFD9 1639 aa34.38■■■■□ 3.09
CCDC43-204ENST00000588687 TARBP1Q13395 1621 aaKnown RBP34.37■■■■□ 3.09
CCDC43-204ENST00000588687 POLA1P09884 1462 aaPredicted RBP34.25■■■■□ 3.07
CCDC43-204ENST00000588687 ARHGEF11O15085 1522 aa34.25■■■■□ 3.07
CCDC43-204ENST00000588687 CHD1O14646 1710 aa34.2■■■■□ 3.07
CCDC43-204ENST00000588687 AQRO60306 1485 aaKnown RBP eCLIP34.2■■■■□ 3.06
CCDC43-204ENST00000588687 RAD54L2Q9Y4B4 1467 aa34.07■■■■□ 3.05
CCDC43-204ENST00000588687 WDR97A6NE52 1622 aa34■■■■□ 3.03
CCDC43-204ENST00000588687 FGD5Q6ZNL6 1462 aa34■■■■□ 3.03
CCDC43-204ENST00000588687 CUX1P39880 1505 aa33.99■■■■□ 3.03
CCDC43-204ENST00000588687 SOGA1O94964 1423 aa33.97■■■■□ 3.03
CCDC43-204ENST00000588687 TDRD9Q8NDG6 1382 aaKnown RBP33.93■■■■□ 3.02
CCDC43-204ENST00000588687 ARAP1Q96P48 1450 aa33.93■■■■□ 3.02
CCDC43-204ENST00000588687 SNAPC4Q5SXM2 1469 aa33.89■■■■□ 3.02
CCDC43-204ENST00000588687 CLASP1Q7Z460 1538 aa33.84■■■■□ 3.01
CCDC43-204ENST00000588687 FBLN2P98095 1184 aa33.81■■■■□ 3
CCDC43-204ENST00000588687 MAGI1Q96QZ7 1491 aaPredicted RBP33.81■■■■□ 3
CCDC43-204ENST00000588687 CYB5RLQ6IPT4 315 aa33.8■■■■□ 3
CCDC43-204ENST00000588687 GRIN2BQ13224 1484 aa33.76■■■□□ 2.99
CCDC43-204ENST00000588687 SYNJ1O43426 1573 aa33.71■■■□□ 2.99
CCDC43-204ENST00000588687 PBRM1Q86U86 1689 aa33.71■■■□□ 2.99
CCDC43-204ENST00000588687 SYNJ2O15056 1496 aa33.69■■■□□ 2.98
CCDC43-204ENST00000588687 ABCA5Q8WWZ7 1642 aa33.66■■■□□ 2.98
CCDC43-204ENST00000588687 ABCA10Q8WWZ4 1543 aa33.62■■■□□ 2.97
CCDC43-204ENST00000588687 GAPVD1Q14C86 1478 aa33.61■■■□□ 2.97
CCDC43-204ENST00000588687 CHMP7Q8WUX9 453 aaPredicted RBP33.58■■■□□ 2.97
CCDC43-204ENST00000588687 BIVM-ERCC5R4GMW8 1640 aa33.45■■■□□ 2.95
CCDC43-204ENST00000588687 SUPT5HO00267 1087 aaKnown RBP33.42■■■□□ 2.94
CCDC43-204ENST00000588687 TOP2BQ02880 1626 aa33.41■■■□□ 2.94
CCDC43-204ENST00000588687 ADAMTS12P58397 1594 aa33.39■■■□□ 2.94
CCDC43-204ENST00000588687 TRHP20396 242 aaPredicted RBP33.39■■■□□ 2.94
CCDC43-204ENST00000588687 WRNQ14191 1432 aaPredicted RBP eCLIP33.36■■■□□ 2.93
CCDC43-204ENST00000588687 GRIN2AQ12879 1464 aa33.36■■■□□ 2.93
CCDC43-204ENST00000588687 CEP170Q5SW79 1584 aa33.3■■■□□ 2.92
CCDC43-204ENST00000588687 NUP160Q12769 1436 aa33.28■■■□□ 2.92
CCDC43-204ENST00000588687 ERCC6L2Q5T890 1561 aa33.28■■■□□ 2.92
CCDC43-204ENST00000588687 SHROOM2Q13796 1616 aa33.21■■■□□ 2.91
CCDC43-204ENST00000588687 ERICH3Q5RHP9 1530 aa33.19■■■□□ 2.9
CCDC43-204ENST00000588687 FHAD1B1AJZ9 1412 aa33.19■■■□□ 2.9
CCDC43-204ENST00000588687 RUSC2Q8N2Y8 1516 aa32.95■■■□□ 2.87
CCDC43-204ENST00000588687 PRG4Q92954 1404 aaPredicted RBP32.86■■■□□ 2.85
CCDC43-204ENST00000588687 KIF13AQ9H1H9 1805 aa32.81■■■□□ 2.84
CCDC43-204ENST00000588687 JPH4Q96JJ6 628 aa32.76■■■□□ 2.83
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms