RNA–Protein interactions for RNA: ENST00000398559.6

TMF1-201, Transcript of TATA element modulatory factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMF1, Length 6,849 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMF1-201ENST00000398559 DCAF8L2P0C7V8 631 aa20.01■□□□□ 0.79
TMF1-201ENST00000398559 SUPT5HO00267 1087 aaKnown RBP19.21■□□□□ 0.67
TMF1-201ENST00000398559 PELP1Q8IZL8 1130 aaKnown RBP18.88■□□□□ 0.61
TMF1-201ENST00000398559 EHMT2Q96KQ7 1210 aa18.82■□□□□ 0.6
TMF1-201ENST00000398559 SHROOM4Q9ULL8 1493 aa18.76■□□□□ 0.59
TMF1-201ENST00000398559 NISCHQ9Y2I1 1504 aa18.5■□□□□ 0.55
TMF1-201ENST00000398559 APLP2Q06481 763 aa18.38■□□□□ 0.53
TMF1-201ENST00000398559 PCGF6Q9BYE7 350 aa18.28■□□□□ 0.52
TMF1-201ENST00000398559 TTBK1Q5TCY1 1321 aaPredicted RBP18.24■□□□□ 0.51
TMF1-201ENST00000398559 ERICH6Q7L0X2 663 aa18.21■□□□□ 0.51
TMF1-201ENST00000398559 FAM9AQ8IZU1 332 aaPredicted RBP18.19■□□□□ 0.5
TMF1-201ENST00000398559 CENPBP07199 599 aaPredicted RBP18.15■□□□□ 0.5
TMF1-201ENST00000398559 CCER1Q8TC90 406 aaPredicted RBP18.03■□□□□ 0.48
TMF1-201ENST00000398559 ZEB1P37275 1124 aaPredicted RBP17.99■□□□□ 0.47
TMF1-201ENST00000398559 RANGAP1P46060 587 aaPredicted RBP17.88■□□□□ 0.45
TMF1-201ENST00000398559 YTHDC1Q96MU7 727 aaKnown RBP17.79■□□□□ 0.44
TMF1-201ENST00000398559 MYT1Q01538 1121 aa17.79■□□□□ 0.44
TMF1-201ENST00000398559 NEFLP07196 543 aa17.75■□□□□ 0.43
TMF1-201ENST00000398559 TRIM41Q8WV44 630 aa17.73■□□□□ 0.43
TMF1-201ENST00000398559 ATP1B4Q9UN42 357 aaPredicted RBP17.71■□□□□ 0.43
TMF1-201ENST00000398559 UBTFP17480 764 aaKnown RBP17.58■□□□□ 0.4
TMF1-201ENST00000398559 PPARGC1BQ86YN6 1023 aaKnown RBP17.49■□□□□ 0.39
TMF1-201ENST00000398559 TRIM26Q12899 539 aaPredicted RBP17.37■□□□□ 0.37
TMF1-201ENST00000398559 HRCP23327 699 aa17.31■□□□□ 0.36
TMF1-201ENST00000398559 DAXXQ9UER7 740 aaPredicted RBP17.31■□□□□ 0.36
TMF1-201ENST00000398559 POLR3GLQ9BT43 218 aa17.18■□□□□ 0.34
TMF1-201ENST00000398559 ITGAEP38570 1179 aa17.16■□□□□ 0.34
TMF1-201ENST00000398559 CNGB1Q14028 1251 aaPredicted RBP17.06■□□□□ 0.32
TMF1-201ENST00000398559 LOC105371045A0A1W2PR82 267 aa17.05■□□□□ 0.32
TMF1-201ENST00000398559 HNRNPUL2Q1KMD3 747 aaKnown RBP17.05■□□□□ 0.32
TMF1-201ENST00000398559 RTL5Q5HYW3 569 aaPredicted RBP16.96■□□□□ 0.31
TMF1-201ENST00000398559 MYT1LQ9UL68 1186 aa16.96■□□□□ 0.31
TMF1-201ENST00000398559 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.95■□□□□ 0.3
TMF1-201ENST00000398559 DIEXFQ68CQ4 756 aaKnown RBP16.94■□□□□ 0.3
TMF1-201ENST00000398559 ZNF316A6NFI3 1004 aaPredicted RBP16.92■□□□□ 0.3
TMF1-201ENST00000398559 CHIC1Q5VXU3 224 aa16.87■□□□□ 0.29
TMF1-201ENST00000398559 CLSPNQ9HAW4 1339 aa16.85■□□□□ 0.29
TMF1-201ENST00000398559 SLC4A1APQ9BWU0 796 aaKnown RBP16.8■□□□□ 0.28
TMF1-201ENST00000398559 BCANQ96GW7 911 aa16.75■□□□□ 0.27
TMF1-201ENST00000398559 GTF3C3Q9Y5Q9 886 aa16.73■□□□□ 0.27
TMF1-201ENST00000398559 FAM50AQ14320 339 aaKnown RBP16.65■□□□□ 0.26
TMF1-201ENST00000398559 NEUROD1Q13562 356 aa16.63■□□□□ 0.25
TMF1-201ENST00000398559 CDK11AQ9UQ88 783 aaPredicted RBP16.61■□□□□ 0.25
TMF1-201ENST00000398559 TRIM52Q96A61 297 aa16.59■□□□□ 0.25
TMF1-201ENST00000398559 ANP32CO43423 234 aa16.55■□□□□ 0.24
TMF1-201ENST00000398559 ZNF326Q5BKZ1 582 aaKnown RBP16.45■□□□□ 0.22
TMF1-201ENST00000398559 ZBTB47Q9UFB7 747 aaPredicted RBP16.42■□□□□ 0.22
TMF1-201ENST00000398559 ACIN1Q9UKV3 1341 aaKnown RBP16.41■□□□□ 0.22
TMF1-201ENST00000398559 CANXP27824 592 aaKnown RBP16.37■□□□□ 0.21
TMF1-201ENST00000398559 BCL11AQ9H165 835 aa16.36■□□□□ 0.21
TMF1-201ENST00000398559 ANP32AP39687 249 aaKnown RBP16.35■□□□□ 0.21
TMF1-201ENST00000398559 NPM2Q86SE8 214 aaKnown RBP16.3■□□□□ 0.2
TMF1-201ENST00000398559 SLC24A1O60721 1099 aa16.25■□□□□ 0.19
TMF1-201ENST00000398559 EIF5BO60841 1220 aaKnown RBP16.22■□□□□ 0.19
TMF1-201ENST00000398559 FKBP8Q14318 412 aa16.2■□□□□ 0.18
TMF1-201ENST00000398559 NEFMP07197 916 aa16.16■□□□□ 0.18
TMF1-201ENST00000398559 ANP32BQ92688 251 aaKnown RBP16.11■□□□□ 0.17
TMF1-201ENST00000398559 PABPN1Q86U42 306 aaKnown RBP eCLIP16.1■□□□□ 0.17
TMF1-201ENST00000398559 P3H3Q8IVL6 736 aa16.09■□□□□ 0.17
TMF1-201ENST00000398559 ARID3CA6NKF2 412 aa16.06■□□□□ 0.16
TMF1-201ENST00000398559 HSP90AA1P07900 732 aaKnown RBP16.05■□□□□ 0.16
TMF1-201ENST00000398559 FBLN2P98095 1184 aa16.05■□□□□ 0.16
TMF1-201ENST00000398559 HNRNPUQ00839 825 aaKnown RBP eCLIP16.04■□□□□ 0.16
TMF1-201ENST00000398559 NBR1Q14596 966 aa16.03■□□□□ 0.16
TMF1-201ENST00000398559 FAM9BQ8IZU0 186 aa16.01■□□□□ 0.15
TMF1-201ENST00000398559 UPF2Q9HAU5 1272 aaKnown RBP16■□□□□ 0.15
TMF1-201ENST00000398559 ZNF777Q9ULD5 760 aaPredicted RBP15.99■□□□□ 0.15
TMF1-201ENST00000398559 DDX10Q13206 875 aaKnown RBP15.98■□□□□ 0.15
TMF1-201ENST00000398559 GLIPR1L2Q4G1C9 344 aa15.98■□□□□ 0.15
TMF1-201ENST00000398559 TONSLQ96HA7 1378 aa15.97■□□□□ 0.15
TMF1-201ENST00000398559 CSRNP3Q8WYN3 585 aa15.97■□□□□ 0.15
TMF1-201ENST00000398559 SALL2Q9Y467 1007 aaPredicted RBP15.95■□□□□ 0.14
TMF1-201ENST00000398559 ABCC9O60706 1549 aa15.94■□□□□ 0.14
TMF1-201ENST00000398559 CCDC136Q96JN2 1154 aa15.92■□□□□ 0.14
TMF1-201ENST00000398559 ARXQ96QS3 562 aa15.92■□□□□ 0.14
TMF1-201ENST00000398559 SCAF1Q9H7N4 1312 aaKnown RBP15.88■□□□□ 0.13
TMF1-201ENST00000398559 DCAF1Q9Y4B6 1507 aa15.85■□□□□ 0.13
TMF1-201ENST00000398559 TMC1Q8TDI8 760 aa15.84■□□□□ 0.13
TMF1-201ENST00000398559 IRX6P78412 446 aaPredicted RBP15.83■□□□□ 0.13
TMF1-201ENST00000398559 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.82■□□□□ 0.12
TMF1-201ENST00000398559 CHGAP10645 457 aaKnown RBP15.81■□□□□ 0.12
TMF1-201ENST00000398559 MIER1Q8N108 512 aa15.79■□□□□ 0.12
TMF1-201ENST00000398559 MRS2Q9HD23 443 aa15.77■□□□□ 0.12
TMF1-201ENST00000398559 WDR43Q15061 677 aaKnown RBP eCLIP15.76■□□□□ 0.11
TMF1-201ENST00000398559 STAG3Q9UJ98 1225 aa15.73■□□□□ 0.11
TMF1-201ENST00000398559 CHIC2Q9UKJ5 165 aa15.72■□□□□ 0.11
TMF1-201ENST00000398559 HIRIP3Q9BW71 556 aaPredicted RBP15.7■□□□□ 0.1
TMF1-201ENST00000398559 ESF1Q9H501 851 aaKnown RBP15.69■□□□□ 0.1
TMF1-201ENST00000398559 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.67■□□□□ 0.12e-7■■□□□ 12.3
TMF1-201ENST00000398559 KDM2AQ9Y2K7 1162 aa15.67■□□□□ 0.1
TMF1-201ENST00000398559 DDRGK1Q96HY6 314 aa15.66■□□□□ 0.1
TMF1-201ENST00000398559 BECN1Q14457 450 aa15.63■□□□□ 0.09
TMF1-201ENST00000398559 TRIM44Q96DX7 344 aaPredicted RBP15.63■□□□□ 0.09
TMF1-201ENST00000398559 MYH16Q9H6N6 1097 aa15.63■□□□□ 0.09
TMF1-201ENST00000398559 PLPPR3Q6T4P5 718 aa15.62■□□□□ 0.09
TMF1-201ENST00000398559 ANP32EQ9BTT0 268 aa15.6■□□□□ 0.09
TMF1-201ENST00000398559 EIF4G2P78344 907 aaKnown RBP eCLIP15.57■□□□□ 0.08
TMF1-201ENST00000398559 SCRIBQ14160 1630 aa15.56■□□□□ 0.08
TMF1-201ENST00000398559 NCLP19338 710 aaKnown RBP15.56■□□□□ 0.08
TMF1-201ENST00000398559 GOLGA6L22H0YM25 854 aa15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms