RNA–Protein interactions for RNA: ENST00000538545.6

ACTN1-205, Transcript of actinin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene ACTN1, Length 2,813 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-205ENST00000538545 NISCHQ9Y2I1 1504 aa31.15■■■□□ 2.58
ACTN1-205ENST00000538545 CCDC180Q9P1Z9 1646 aa26.76■■□□□ 1.87
ACTN1-205ENST00000538545 DCAF8L2P0C7V8 631 aa26.24■■□□□ 1.79
ACTN1-205ENST00000538545 SHROOM4Q9ULL8 1493 aa26.21■■□□□ 1.79
ACTN1-205ENST00000538545 ZCCHC6Q5VYS8 1495 aaKnown RBP26.19■■□□□ 1.78
ACTN1-205ENST00000538545 ABCC9O60706 1549 aa25.63■■□□□ 1.69
ACTN1-205ENST00000538545 DCAF1Q9Y4B6 1507 aa25.45■■□□□ 1.66
ACTN1-205ENST00000538545 SUPT5HO00267 1087 aaKnown RBP25.32■■□□□ 1.64
ACTN1-205ENST00000538545 SCRIBQ14160 1630 aa25.11■■□□□ 1.61
ACTN1-205ENST00000538545 MYO15BQ96JP2 1530 aa24.97■■□□□ 1.59
ACTN1-205ENST00000538545 NACADO15069 1562 aa24.93■■□□□ 1.58
ACTN1-205ENST00000538545 RB1CC1Q8TDY2 1594 aa24.72■■□□□ 1.55
ACTN1-205ENST00000538545 CECR2Q9BXF3 1484 aa24.45■■□□□ 1.5
ACTN1-205ENST00000538545 UNC13AQ9UPW8 1703 aa24.43■■□□□ 1.5
ACTN1-205ENST00000538545 PABPN1Q86U42 306 aaKnown RBP eCLIP24.4■■□□□ 1.5
ACTN1-205ENST00000538545 RSF1Q96T23 1441 aaPredicted RBP24.39■■□□□ 1.5
ACTN1-205ENST00000538545 MROH2BQ7Z745 1585 aa24.25■■□□□ 1.47
ACTN1-205ENST00000538545 CHIC1Q5VXU3 224 aa24.16■■□□□ 1.46
ACTN1-205ENST00000538545 BICRAQ9NZM4 1560 aa24.13■■□□□ 1.45
ACTN1-205ENST00000538545 WIZO95785 1651 aa24.09■■□□□ 1.45
ACTN1-205ENST00000538545 BAZ1AQ9NRL2 1556 aaPredicted RBP23.96■■□□□ 1.43
ACTN1-205ENST00000538545 SMARCA4P51532 1647 aa23.89■■□□□ 1.41
ACTN1-205ENST00000538545 TOP2AP11388 1531 aaKnown RBP23.61■■□□□ 1.37
ACTN1-205ENST00000538545 TRIM41Q8WV44 630 aa23.55■■□□□ 1.36
ACTN1-205ENST00000538545 CCDC88BA6NC98 1476 aa23.55■■□□□ 1.36
ACTN1-205ENST00000538545 LOC105371045A0A1W2PR82 267 aa23.52■■□□□ 1.36
ACTN1-205ENST00000538545 SMARCA2P51531 1590 aa23.5■■□□□ 1.35
ACTN1-205ENST00000538545 ATAD2BQ9ULI0 1458 aa23.47■■□□□ 1.35
ACTN1-205ENST00000538545 FAM9AQ8IZU1 332 aaPredicted RBP23.46■■□□□ 1.35
ACTN1-205ENST00000538545 PEG3Q9GZU2 1588 aa23.39■■□□□ 1.34
ACTN1-205ENST00000538545 EHMT2Q96KQ7 1210 aa23.38■■□□□ 1.33
ACTN1-205ENST00000538545 EIF4G1Q04637 1599 aaKnown RBP23.37■■□□□ 1.33
ACTN1-205ENST00000538545 BAZ1BQ9UIG0 1483 aaKnown RBP23.36■■□□□ 1.33
ACTN1-205ENST00000538545 ABCC8Q09428 1581 aa23.31■■□□□ 1.32
ACTN1-205ENST00000538545 NCAPD3P42695 1498 aa23.1■■□□□ 1.29
ACTN1-205ENST00000538545 CC2D2AQ9P2K1 1620 aa23.01■■□□□ 1.27
ACTN1-205ENST00000538545 HMGXB3Q12766 1538 aa23.01■■□□□ 1.27
ACTN1-205ENST00000538545 SOGA1O94964 1423 aa22.93■■□□□ 1.26
ACTN1-205ENST00000538545 WRNQ14191 1432 aaPredicted RBP eCLIP22.93■■□□□ 1.26
ACTN1-205ENST00000538545 RUSC2Q8N2Y8 1516 aa22.89■■□□□ 1.26
ACTN1-205ENST00000538545 SYNJ1O43426 1573 aa22.88■■□□□ 1.25
ACTN1-205ENST00000538545 DNAJC5BQ9UF47 199 aa22.85■■□□□ 1.25
ACTN1-205ENST00000538545 CFTRP13569 1480 aa22.72■■□□□ 1.23
ACTN1-205ENST00000538545 PCGF6Q9BYE7 350 aa22.7■■□□□ 1.22
ACTN1-205ENST00000538545 CSRNP3Q8WYN3 585 aa22.67■■□□□ 1.22
ACTN1-205ENST00000538545 CADPSQ9ULU8 1353 aa22.64■■□□□ 1.21
ACTN1-205ENST00000538545 NESP48681 1621 aa22.62■■□□□ 1.21
ACTN1-205ENST00000538545 CUX1P39880 1505 aa22.6■■□□□ 1.21
ACTN1-205ENST00000538545 TOP2BQ02880 1626 aa22.59■■□□□ 1.21
ACTN1-205ENST00000538545 PPARGC1BQ86YN6 1023 aaKnown RBP22.59■■□□□ 1.21
ACTN1-205ENST00000538545 UBTFP17480 764 aaKnown RBP22.57■■□□□ 1.2
ACTN1-205ENST00000538545 BIVM-ERCC5R4GMW8 1640 aa22.51■■□□□ 1.19
ACTN1-205ENST00000538545 EEA1Q15075 1411 aa22.48■■□□□ 1.19
ACTN1-205ENST00000538545 RANGAP1P46060 587 aaPredicted RBP22.48■■□□□ 1.19
ACTN1-205ENST00000538545 PRDM2Q13029 1718 aa22.46■■□□□ 1.19
ACTN1-205ENST00000538545 FANCD2Q9BXW9 1451 aa22.44■■□□□ 1.18
ACTN1-205ENST00000538545 CEP162Q5TB80 1403 aa22.4■■□□□ 1.18
ACTN1-205ENST00000538545 TTBK1Q5TCY1 1321 aaPredicted RBP22.39■■□□□ 1.18
ACTN1-205ENST00000538545 RAPGEF2Q9Y4G8 1499 aa22.38■■□□□ 1.17
ACTN1-205ENST00000538545 GOLGA3Q08378 1498 aa22.38■■□□□ 1.17
ACTN1-205ENST00000538545 TNIKQ9UKE5 1360 aa22.36■■□□□ 1.17
ACTN1-205ENST00000538545 FGD5Q6ZNL6 1462 aa22.32■■□□□ 1.16
ACTN1-205ENST00000538545 CEP164Q9UPV0 1460 aa22.32■■□□□ 1.16
ACTN1-205ENST00000538545 TRIM26Q12899 539 aaPredicted RBP22.31■■□□□ 1.16
ACTN1-205ENST00000538545 KIF21BO75037 1637 aa22.27■■□□□ 1.16
ACTN1-205ENST00000538545 CUX2O14529 1486 aa22.26■■□□□ 1.15
ACTN1-205ENST00000538545 KIF27Q86VH2 1401 aa22.26■■□□□ 1.15
ACTN1-205ENST00000538545 RAD54L2Q9Y4B4 1467 aa22.25■■□□□ 1.15
ACTN1-205ENST00000538545 LAMC3Q9Y6N6 1575 aa22.22■■□□□ 1.15
ACTN1-205ENST00000538545 TOPBP1Q92547 1522 aa22.21■■□□□ 1.15
ACTN1-205ENST00000538545 URB2Q14146 1524 aaKnown RBP22.18■■□□□ 1.14
ACTN1-205ENST00000538545 PRXQ9BXM0 1461 aa22.17■■□□□ 1.14
ACTN1-205ENST00000538545 KIF21AQ7Z4S6 1674 aa22.17■■□□□ 1.14
ACTN1-205ENST00000538545 POLA1P09884 1462 aaPredicted RBP22.16■■□□□ 1.14
ACTN1-205ENST00000538545 DNMBPQ6XZF7 1577 aa22.15■■□□□ 1.14
ACTN1-205ENST00000538545 CLIP1P30622 1438 aa22.14■■□□□ 1.14
ACTN1-205ENST00000538545 IGF1RP08069 1367 aa22.13■■□□□ 1.13
ACTN1-205ENST00000538545 PDS5BQ9NTI5 1447 aa22.12■■□□□ 1.13
ACTN1-205ENST00000538545 HRCP23327 699 aa22.04■■□□□ 1.12
ACTN1-205ENST00000538545 TDRD9Q8NDG6 1382 aaKnown RBP22.04■■□□□ 1.12
ACTN1-205ENST00000538545 ERICH3Q5RHP9 1530 aa22.03■■□□□ 1.12
ACTN1-205ENST00000538545 CARMIL1Q5VZK9 1371 aa22.02■■□□□ 1.12
ACTN1-205ENST00000538545 ABCA10Q8WWZ4 1543 aa21.98■■□□□ 1.11
ACTN1-205ENST00000538545 VPS8Q8N3P4 1428 aa21.91■■□□□ 1.1
ACTN1-205ENST00000538545 P3H3Q8IVL6 736 aa21.89■■□□□ 1.09
ACTN1-205ENST00000538545 ARAP1Q96P48 1450 aa21.89■■□□□ 1.09
ACTN1-205ENST00000538545 WDR97A6NE52 1622 aa21.85■■□□□ 1.09
ACTN1-205ENST00000538545 MRC2Q9UBG0 1479 aa21.84■■□□□ 1.09
ACTN1-205ENST00000538545 ARHGAP35Q9NRY4 1499 aa21.83■■□□□ 1.09
ACTN1-205ENST00000538545 GAPVD1Q14C86 1478 aa21.83■■□□□ 1.08
ACTN1-205ENST00000538545 AQRO60306 1485 aaKnown RBP eCLIP21.82■■□□□ 1.084e-7■■■■■ 30.8
ACTN1-205ENST00000538545 ERCC6Q03468 1493 aa21.82■■□□□ 1.08
ACTN1-205ENST00000538545 APLP2Q06481 763 aa21.81■■□□□ 1.08
ACTN1-205ENST00000538545 TARBP1Q13395 1621 aaKnown RBP21.8■■□□□ 1.08
ACTN1-205ENST00000538545 ABCA5Q8WWZ7 1642 aa21.78■■□□□ 1.08
ACTN1-205ENST00000538545 KANK4Q5T7N3 995 aaPredicted RBP21.76■■□□□ 1.07
ACTN1-205ENST00000538545 ZNF608Q9ULD9 1512 aaPredicted RBP21.75■■□□□ 1.07
ACTN1-205ENST00000538545 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.74■■□□□ 1.07
ACTN1-205ENST00000538545 CUL7Q14999 1698 aa21.69■■□□□ 1.06
ACTN1-205ENST00000538545 ATP1B4Q9UN42 357 aaPredicted RBP21.69■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms