RNA–Protein interactions for RNA: ENST00000193403.10

ACTN1-201, Transcript of actinin alpha 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ACTN1, Length 3,779 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-201ENST00000193403 NISCHQ9Y2I1 1504 aa20.68■□□□□ 0.9
ACTN1-201ENST00000193403 SHROOM4Q9ULL8 1493 aa19.18■□□□□ 0.66
ACTN1-201ENST00000193403 DCAF8L2P0C7V8 631 aa19.17■□□□□ 0.66
ACTN1-201ENST00000193403 SUPT5HO00267 1087 aaKnown RBP19.14■□□□□ 0.65
ACTN1-201ENST00000193403 PCGF6Q9BYE7 350 aa18.59■□□□□ 0.57
ACTN1-201ENST00000193403 HRCP23327 699 aa18.4■□□□□ 0.54
ACTN1-201ENST00000193403 PPARGC1BQ86YN6 1023 aaKnown RBP18.36■□□□□ 0.53
ACTN1-201ENST00000193403 EHMT2Q96KQ7 1210 aa18.33■□□□□ 0.53
ACTN1-201ENST00000193403 CHIC1Q5VXU3 224 aa18.17■□□□□ 0.5
ACTN1-201ENST00000193403 LOC105371045A0A1W2PR82 267 aa18.04■□□□□ 0.48
ACTN1-201ENST00000193403 MYO15BQ96JP2 1530 aa17.93■□□□□ 0.46
ACTN1-201ENST00000193403 FAM9AQ8IZU1 332 aaPredicted RBP17.88■□□□□ 0.45
ACTN1-201ENST00000193403 ABCC9O60706 1549 aa17.85■□□□□ 0.45
ACTN1-201ENST00000193403 TRIM26Q12899 539 aaPredicted RBP17.71■□□□□ 0.43
ACTN1-201ENST00000193403 TTBK1Q5TCY1 1321 aaPredicted RBP17.69■□□□□ 0.42
ACTN1-201ENST00000193403 TRIM41Q8WV44 630 aa17.54■□□□□ 0.4
ACTN1-201ENST00000193403 ZEB1P37275 1124 aaPredicted RBP17.5■□□□□ 0.39
ACTN1-201ENST00000193403 PELP1Q8IZL8 1130 aaKnown RBP17.47■□□□□ 0.39
ACTN1-201ENST00000193403 ZCCHC6Q5VYS8 1495 aaKnown RBP17.44■□□□□ 0.38
ACTN1-201ENST00000193403 CCER1Q8TC90 406 aaPredicted RBP17.37■□□□□ 0.37
ACTN1-201ENST00000193403 DCAF1Q9Y4B6 1507 aa17.36■□□□□ 0.37
ACTN1-201ENST00000193403 PABPN1Q86U42 306 aaKnown RBP eCLIP17.35■□□□□ 0.37
ACTN1-201ENST00000193403 SCAF1Q9H7N4 1312 aaKnown RBP17.33■□□□□ 0.37
ACTN1-201ENST00000193403 CCDC180Q9P1Z9 1646 aa17.32■□□□□ 0.36
ACTN1-201ENST00000193403 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.3■□□□□ 0.36
ACTN1-201ENST00000193403 YTHDC1Q96MU7 727 aaKnown RBP17.21■□□□□ 0.35
ACTN1-201ENST00000193403 RANGAP1P46060 587 aaPredicted RBP17.18■□□□□ 0.34
ACTN1-201ENST00000193403 CENPBP07199 599 aaPredicted RBP17.16■□□□□ 0.34
ACTN1-201ENST00000193403 GTF3C3Q9Y5Q9 886 aa17.1■□□□□ 0.33
ACTN1-201ENST00000193403 NEUROD1Q13562 356 aa17.05■□□□□ 0.32
ACTN1-201ENST00000193403 DIEXFQ68CQ4 756 aaKnown RBP17.05■□□□□ 0.32
ACTN1-201ENST00000193403 ACIN1Q9UKV3 1341 aaKnown RBP17.03■□□□□ 0.32
ACTN1-201ENST00000193403 SCRIBQ14160 1630 aa17.01■□□□□ 0.31
ACTN1-201ENST00000193403 UBTFP17480 764 aaKnown RBP16.87■□□□□ 0.29
ACTN1-201ENST00000193403 HNRNPUL2Q1KMD3 747 aaKnown RBP16.81■□□□□ 0.28
ACTN1-201ENST00000193403 RSF1Q96T23 1441 aaPredicted RBP16.73■□□□□ 0.27
ACTN1-201ENST00000193403 APLP2Q06481 763 aa16.71■□□□□ 0.27
ACTN1-201ENST00000193403 MYT1Q01538 1121 aa16.69■□□□□ 0.26
ACTN1-201ENST00000193403 ZNF316A6NFI3 1004 aaPredicted RBP16.65■□□□□ 0.26
ACTN1-201ENST00000193403 RB1CC1Q8TDY2 1594 aa16.59■□□□□ 0.25
ACTN1-201ENST00000193403 MIER1Q8N108 512 aa16.56■□□□□ 0.24
ACTN1-201ENST00000193403 CECR2Q9BXF3 1484 aa16.53■□□□□ 0.24
ACTN1-201ENST00000193403 NACADO15069 1562 aa16.51■□□□□ 0.23
ACTN1-201ENST00000193403 ITGAEP38570 1179 aa16.5■□□□□ 0.23
ACTN1-201ENST00000193403 ATP1B4Q9UN42 357 aaPredicted RBP16.48■□□□□ 0.23
ACTN1-201ENST00000193403 BCANQ96GW7 911 aa16.39■□□□□ 0.22
ACTN1-201ENST00000193403 CSRNP3Q8WYN3 585 aa16.38■□□□□ 0.21
ACTN1-201ENST00000193403 CEP162Q5TB80 1403 aa16.35■□□□□ 0.21
ACTN1-201ENST00000193403 MROH2BQ7Z745 1585 aa16.26■□□□□ 0.19
ACTN1-201ENST00000193403 SOGA1O94964 1423 aa16.24■□□□□ 0.19
ACTN1-201ENST00000193403 ABCC8Q09428 1581 aa16.21■□□□□ 0.19
ACTN1-201ENST00000193403 CCDC88BA6NC98 1476 aa16.2■□□□□ 0.18
ACTN1-201ENST00000193403 NEFLP07196 543 aa16.15■□□□□ 0.18
ACTN1-201ENST00000193403 WIZO95785 1651 aa16.15■□□□□ 0.18
ACTN1-201ENST00000193403 CNGB1Q14028 1251 aaPredicted RBP16.13■□□□□ 0.17
ACTN1-201ENST00000193403 TNIKQ9UKE5 1360 aa16.13■□□□□ 0.17
ACTN1-201ENST00000193403 SUPT16HQ9Y5B9 1047 aaKnown RBP16.12■□□□□ 0.17
ACTN1-201ENST00000193403 RUSC2Q8N2Y8 1516 aa16.07■□□□□ 0.16
ACTN1-201ENST00000193403 FKBP8Q14318 412 aa16.06■□□□□ 0.16
ACTN1-201ENST00000193403 CLIP1P30622 1438 aa16.06■□□□□ 0.16
ACTN1-201ENST00000193403 ERICH6Q7L0X2 663 aa16.04■□□□□ 0.16
ACTN1-201ENST00000193403 DNAJC5BQ9UF47 199 aa16.03■□□□□ 0.16
ACTN1-201ENST00000193403 GOLGA3Q08378 1498 aa16.01■□□□□ 0.15
ACTN1-201ENST00000193403 HIRIP3Q9BW71 556 aaPredicted RBP16.01■□□□□ 0.15
ACTN1-201ENST00000193403 DDX10Q13206 875 aaKnown RBP16■□□□□ 0.15
ACTN1-201ENST00000193403 WRNQ14191 1432 aaPredicted RBP eCLIP16■□□□□ 0.15
ACTN1-201ENST00000193403 TRIM52Q96A61 297 aa15.97■□□□□ 0.15
ACTN1-201ENST00000193403 KCNH8Q96L42 1107 aa15.97■□□□□ 0.15
ACTN1-201ENST00000193403 FAM50AQ14320 339 aaKnown RBP15.96■□□□□ 0.14
ACTN1-201ENST00000193403 TSHZ2Q9NRE2 1034 aa15.95■□□□□ 0.14
ACTN1-201ENST00000193403 BAZ1AQ9NRL2 1556 aaPredicted RBP15.94■□□□□ 0.14
ACTN1-201ENST00000193403 ANP32EQ9BTT0 268 aa15.94■□□□□ 0.14
ACTN1-201ENST00000193403 P3H3Q8IVL6 736 aa15.91■□□□□ 0.14
ACTN1-201ENST00000193403 BICRAQ9NZM4 1560 aa15.89■□□□□ 0.13
ACTN1-201ENST00000193403 BAZ1BQ9UIG0 1483 aaKnown RBP15.89■□□□□ 0.13
ACTN1-201ENST00000193403 EEA1Q15075 1411 aa15.89■□□□□ 0.13
ACTN1-201ENST00000193403 CLSPNQ9HAW4 1339 aa15.87■□□□□ 0.13
ACTN1-201ENST00000193403 UNC13AQ9UPW8 1703 aa15.86■□□□□ 0.13
ACTN1-201ENST00000193403 POLR3GLQ9BT43 218 aa15.86■□□□□ 0.13
ACTN1-201ENST00000193403 KANK4Q5T7N3 995 aaPredicted RBP15.86■□□□□ 0.13
ACTN1-201ENST00000193403 IRX6P78412 446 aaPredicted RBP15.85■□□□□ 0.13
ACTN1-201ENST00000193403 CEP164Q9UPV0 1460 aa15.83■□□□□ 0.12
ACTN1-201ENST00000193403 ANP32CO43423 234 aa15.82■□□□□ 0.12
ACTN1-201ENST00000193403 VPS8Q8N3P4 1428 aa15.81■□□□□ 0.12
ACTN1-201ENST00000193403 BCL11AQ9H165 835 aa15.81■□□□□ 0.12
ACTN1-201ENST00000193403 SMARCA4P51532 1647 aa15.8■□□□□ 0.12
ACTN1-201ENST00000193403 SIN3AQ96ST3 1273 aa15.8■□□□□ 0.12
ACTN1-201ENST00000193403 DHX57Q6P158 1386 aaKnown RBP15.77■□□□□ 0.11
ACTN1-201ENST00000193403 ATAD2BQ9ULI0 1458 aa15.77■□□□□ 0.11
ACTN1-201ENST00000193403 ARID3CA6NKF2 412 aa15.74■□□□□ 0.11
ACTN1-201ENST00000193403 TOP2AP11388 1531 aaKnown RBP15.74■□□□□ 0.11
ACTN1-201ENST00000193403 RAPGEF2Q9Y4G8 1499 aa15.73■□□□□ 0.11
ACTN1-201ENST00000193403 HNRNPUQ00839 825 aaKnown RBP eCLIP15.71■□□□□ 0.113e-7■■□□□ 13
ACTN1-201ENST00000193403 AEBP2Q6ZN18 517 aaPredicted RBP15.71■□□□□ 0.1
ACTN1-201ENST00000193403 RBM19Q9Y4C8 960 aaKnown RBP15.71■□□□□ 0.1
ACTN1-201ENST00000193403 FBLN2P98095 1184 aa15.69■□□□□ 0.1
ACTN1-201ENST00000193403 CDK11AQ9UQ88 783 aaPredicted RBP15.69■□□□□ 0.1
ACTN1-201ENST00000193403 SMARCA2P51531 1590 aa15.68■□□□□ 0.1
ACTN1-201ENST00000193403 EIF4G1Q04637 1599 aaKnown RBP15.67■□□□□ 0.1
ACTN1-201ENST00000193403 CCNB3Q8WWL7 1395 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms