RNA–Protein interactions for RNA: ENST00000376839.7

ACTN1-202, Transcript of actinin alpha 1, humanhuman

TSL 2 BASIC

Gene ACTN1, Length 2,824 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-202ENST00000376839 NISCHQ9Y2I1 1504 aa27.06■■□□□ 1.92
ACTN1-202ENST00000376839 SHROOM4Q9ULL8 1493 aa23.27■■□□□ 1.32
ACTN1-202ENST00000376839 ZCCHC6Q5VYS8 1495 aaKnown RBP22.92■■□□□ 1.26
ACTN1-202ENST00000376839 CCDC180Q9P1Z9 1646 aa22.87■■□□□ 1.25
ACTN1-202ENST00000376839 SUPT5HO00267 1087 aaKnown RBP22.87■■□□□ 1.25
ACTN1-202ENST00000376839 DCAF8L2P0C7V8 631 aa22.43■■□□□ 1.18
ACTN1-202ENST00000376839 MYO15BQ96JP2 1530 aa22.32■■□□□ 1.16
ACTN1-202ENST00000376839 CHIC1Q5VXU3 224 aa22.31■■□□□ 1.16
ACTN1-202ENST00000376839 DCAF1Q9Y4B6 1507 aa22.15■■□□□ 1.14
ACTN1-202ENST00000376839 HRCP23327 699 aa21.9■■□□□ 1.1
ACTN1-202ENST00000376839 PCGF6Q9BYE7 350 aa21.8■■□□□ 1.08
ACTN1-202ENST00000376839 LOC105371045A0A1W2PR82 267 aa21.69■■□□□ 1.06
ACTN1-202ENST00000376839 ABCC9O60706 1549 aa21.67■■□□□ 1.06
ACTN1-202ENST00000376839 SCRIBQ14160 1630 aa21.56■■□□□ 1.04
ACTN1-202ENST00000376839 RSF1Q96T23 1441 aaPredicted RBP21.5■■□□□ 1.03
ACTN1-202ENST00000376839 PPARGC1BQ86YN6 1023 aaKnown RBP21.49■■□□□ 1.03
ACTN1-202ENST00000376839 RB1CC1Q8TDY2 1594 aa21.33■■□□□ 1
ACTN1-202ENST00000376839 TRIM26Q12899 539 aaPredicted RBP21.3■■□□□ 1
ACTN1-202ENST00000376839 TRIM41Q8WV44 630 aa21.25■□□□□ 0.99
ACTN1-202ENST00000376839 CECR2Q9BXF3 1484 aa21.15■□□□□ 0.98
ACTN1-202ENST00000376839 FAM9AQ8IZU1 332 aaPredicted RBP21.14■□□□□ 0.98
ACTN1-202ENST00000376839 NACADO15069 1562 aa21.11■□□□□ 0.97
ACTN1-202ENST00000376839 MROH2BQ7Z745 1585 aa21.08■□□□□ 0.96
ACTN1-202ENST00000376839 EHMT2Q96KQ7 1210 aa21■□□□□ 0.95
ACTN1-202ENST00000376839 WIZO95785 1651 aa20.97■□□□□ 0.95
ACTN1-202ENST00000376839 ZEB1P37275 1124 aaPredicted RBP20.86■□□□□ 0.93
ACTN1-202ENST00000376839 BAZ1AQ9NRL2 1556 aaPredicted RBP20.83■□□□□ 0.92
ACTN1-202ENST00000376839 EIF4G1Q04637 1599 aaKnown RBP20.76■□□□□ 0.91
ACTN1-202ENST00000376839 TOP2AP11388 1531 aaKnown RBP20.61■□□□□ 0.89
ACTN1-202ENST00000376839 ABCC8Q09428 1581 aa20.58■□□□□ 0.89
ACTN1-202ENST00000376839 SMARCA4P51532 1647 aa20.57■□□□□ 0.88
ACTN1-202ENST00000376839 CCDC88BA6NC98 1476 aa20.55■□□□□ 0.88
ACTN1-202ENST00000376839 SMARCA2P51531 1590 aa20.52■□□□□ 0.88
ACTN1-202ENST00000376839 UNC13AQ9UPW8 1703 aa20.49■□□□□ 0.87
ACTN1-202ENST00000376839 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.47■□□□□ 0.87
ACTN1-202ENST00000376839 SOGA1O94964 1423 aa20.42■□□□□ 0.86
ACTN1-202ENST00000376839 CEP162Q5TB80 1403 aa20.39■□□□□ 0.85
ACTN1-202ENST00000376839 CCER1Q8TC90 406 aaPredicted RBP20.39■□□□□ 0.85
ACTN1-202ENST00000376839 WRNQ14191 1432 aaPredicted RBP eCLIP20.38■□□□□ 0.85
ACTN1-202ENST00000376839 TTBK1Q5TCY1 1321 aaPredicted RBP20.36■□□□□ 0.85
ACTN1-202ENST00000376839 RUSC2Q8N2Y8 1516 aa20.33■□□□□ 0.84
ACTN1-202ENST00000376839 TNIKQ9UKE5 1360 aa20.31■□□□□ 0.84
ACTN1-202ENST00000376839 SCAF1Q9H7N4 1312 aaKnown RBP20.31■□□□□ 0.84
ACTN1-202ENST00000376839 CSRNP3Q8WYN3 585 aa20.28■□□□□ 0.84
ACTN1-202ENST00000376839 PABPN1Q86U42 306 aaKnown RBP eCLIP20.27■□□□□ 0.84
ACTN1-202ENST00000376839 EEA1Q15075 1411 aa20.26■□□□□ 0.83
ACTN1-202ENST00000376839 BICRAQ9NZM4 1560 aa20.23■□□□□ 0.83
ACTN1-202ENST00000376839 UBTFP17480 764 aaKnown RBP20.23■□□□□ 0.83
ACTN1-202ENST00000376839 GOLGA3Q08378 1498 aa20.17■□□□□ 0.82
ACTN1-202ENST00000376839 PEG3Q9GZU2 1588 aa20.14■□□□□ 0.82
ACTN1-202ENST00000376839 SYNJ1O43426 1573 aa20.1■□□□□ 0.81
ACTN1-202ENST00000376839 DIEXFQ68CQ4 756 aaKnown RBP20.08■□□□□ 0.81
ACTN1-202ENST00000376839 CEP164Q9UPV0 1460 aa20.03■□□□□ 0.8
ACTN1-202ENST00000376839 ACIN1Q9UKV3 1341 aaKnown RBP20.03■□□□□ 0.8
ACTN1-202ENST00000376839 NEUROD1Q13562 356 aa20.02■□□□□ 0.8
ACTN1-202ENST00000376839 ATAD2BQ9ULI0 1458 aa20.01■□□□□ 0.79
ACTN1-202ENST00000376839 KIF21BO75037 1637 aa20.01■□□□□ 0.79
ACTN1-202ENST00000376839 CLIP1P30622 1438 aa19.96■□□□□ 0.79
ACTN1-202ENST00000376839 BAZ1BQ9UIG0 1483 aaKnown RBP19.96■□□□□ 0.79
ACTN1-202ENST00000376839 PELP1Q8IZL8 1130 aaKnown RBP19.95■□□□□ 0.78
ACTN1-202ENST00000376839 RAPGEF2Q9Y4G8 1499 aa19.91■□□□□ 0.78
ACTN1-202ENST00000376839 HNRNPUL2Q1KMD3 747 aaKnown RBP19.91■□□□□ 0.78
ACTN1-202ENST00000376839 VPS8Q8N3P4 1428 aa19.9■□□□□ 0.78
ACTN1-202ENST00000376839 ZNF316A6NFI3 1004 aaPredicted RBP19.88■□□□□ 0.77
ACTN1-202ENST00000376839 CENPBP07199 599 aaPredicted RBP19.84■□□□□ 0.77
ACTN1-202ENST00000376839 RANGAP1P46060 587 aaPredicted RBP19.84■□□□□ 0.77
ACTN1-202ENST00000376839 GTF3C3Q9Y5Q9 886 aa19.82■□□□□ 0.76
ACTN1-202ENST00000376839 TOP2BQ02880 1626 aa19.8■□□□□ 0.76
ACTN1-202ENST00000376839 APLP2Q06481 763 aa19.77■□□□□ 0.76
ACTN1-202ENST00000376839 BIVM-ERCC5R4GMW8 1640 aa19.72■□□□□ 0.75
ACTN1-202ENST00000376839 PRXQ9BXM0 1461 aa19.67■□□□□ 0.74
ACTN1-202ENST00000376839 MIER1Q8N108 512 aa19.66■□□□□ 0.74
ACTN1-202ENST00000376839 YTHDC1Q96MU7 727 aaKnown RBP19.66■□□□□ 0.74
ACTN1-202ENST00000376839 ERICH3Q5RHP9 1530 aa19.65■□□□□ 0.74
ACTN1-202ENST00000376839 ARAP1Q96P48 1450 aa19.65■□□□□ 0.74
ACTN1-202ENST00000376839 CUX1P39880 1505 aa19.6■□□□□ 0.73
ACTN1-202ENST00000376839 KANK4Q5T7N3 995 aaPredicted RBP19.58■□□□□ 0.72
ACTN1-202ENST00000376839 HMGXB3Q12766 1538 aa19.57■□□□□ 0.72
ACTN1-202ENST00000376839 NCAPD3P42695 1498 aa19.56■□□□□ 0.72
ACTN1-202ENST00000376839 DHX57Q6P158 1386 aaKnown RBP19.53■□□□□ 0.72
ACTN1-202ENST00000376839 KIF27Q86VH2 1401 aa19.52■□□□□ 0.71
ACTN1-202ENST00000376839 CLSPNQ9HAW4 1339 aa19.47■□□□□ 0.71
ACTN1-202ENST00000376839 CFTRP13569 1480 aa19.47■□□□□ 0.71
ACTN1-202ENST00000376839 RRBP1Q9P2E9 1410 aaKnown RBP19.45■□□□□ 0.7
ACTN1-202ENST00000376839 ARHGAP35Q9NRY4 1499 aa19.44■□□□□ 0.7
ACTN1-202ENST00000376839 CCNB3Q8WWL7 1395 aa19.37■□□□□ 0.69
ACTN1-202ENST00000376839 CUX2O14529 1486 aa19.35■□□□□ 0.69
ACTN1-202ENST00000376839 ITGAEP38570 1179 aa19.33■□□□□ 0.68
ACTN1-202ENST00000376839 IGF1RP08069 1367 aa19.31■□□□□ 0.68
ACTN1-202ENST00000376839 PRDM2Q13029 1718 aa19.29■□□□□ 0.68
ACTN1-202ENST00000376839 TIAM1Q13009 1591 aa19.24■□□□□ 0.67
ACTN1-202ENST00000376839 CARMIL1Q5VZK9 1371 aa19.23■□□□□ 0.67
ACTN1-202ENST00000376839 RAB3GAP2Q9H2M9 1393 aa19.23■□□□□ 0.67
ACTN1-202ENST00000376839 FGD5Q6ZNL6 1462 aa19.22■□□□□ 0.67
ACTN1-202ENST00000376839 CADPSQ9ULU8 1353 aa19.22■□□□□ 0.67
ACTN1-202ENST00000376839 MAPKBP1O60336 1514 aa19.2■□□□□ 0.66
ACTN1-202ENST00000376839 MAP3K1Q13233 1512 aa19.19■□□□□ 0.66
ACTN1-202ENST00000376839 LRRC9Q6ZRR7 1453 aa19.17■□□□□ 0.66
ACTN1-202ENST00000376839 PHLDB1Q86UU1 1377 aa19.16■□□□□ 0.66
ACTN1-202ENST00000376839 SETD5Q9C0A6 1442 aa19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms