RNA–Protein interactions for RNA: ENST00000394419.8

ACTN1-203, Transcript of actinin alpha 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene ACTN1, Length 3,464 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-203ENST00000394419 NISCHQ9Y2I1 1504 aa20.76■□□□□ 0.91
ACTN1-203ENST00000394419 SHROOM4Q9ULL8 1493 aa18.6■□□□□ 0.57
ACTN1-203ENST00000394419 DCAF8L2P0C7V8 631 aa18.41■□□□□ 0.54
ACTN1-203ENST00000394419 SUPT5HO00267 1087 aaKnown RBP18.39■□□□□ 0.53
ACTN1-203ENST00000394419 CHIC1Q5VXU3 224 aa17.47■□□□□ 0.39
ACTN1-203ENST00000394419 ZCCHC6Q5VYS8 1495 aaKnown RBP17.47■□□□□ 0.39
ACTN1-203ENST00000394419 PCGF6Q9BYE7 350 aa17.38■□□□□ 0.37
ACTN1-203ENST00000394419 CCDC180Q9P1Z9 1646 aa17.25■□□□□ 0.35
ACTN1-203ENST00000394419 EHMT2Q96KQ7 1210 aa17.25■□□□□ 0.35
ACTN1-203ENST00000394419 LOC105371045A0A1W2PR82 267 aa17.24■□□□□ 0.35
ACTN1-203ENST00000394419 MYO15BQ96JP2 1530 aa17.18■□□□□ 0.34
ACTN1-203ENST00000394419 FAM9AQ8IZU1 332 aaPredicted RBP17.12■□□□□ 0.33
ACTN1-203ENST00000394419 HRCP23327 699 aa17.08■□□□□ 0.32
ACTN1-203ENST00000394419 PPARGC1BQ86YN6 1023 aaKnown RBP17■□□□□ 0.31
ACTN1-203ENST00000394419 TRIM41Q8WV44 630 aa16.95■□□□□ 0.3
ACTN1-203ENST00000394419 SCRIBQ14160 1630 aa16.75■□□□□ 0.27
ACTN1-203ENST00000394419 TRIM26Q12899 539 aaPredicted RBP16.75■□□□□ 0.27
ACTN1-203ENST00000394419 ABCC9O60706 1549 aa16.74■□□□□ 0.27
ACTN1-203ENST00000394419 DCAF1Q9Y4B6 1507 aa16.69■□□□□ 0.26
ACTN1-203ENST00000394419 TTBK1Q5TCY1 1321 aaPredicted RBP16.65■□□□□ 0.26
ACTN1-203ENST00000394419 RSF1Q96T23 1441 aaPredicted RBP16.6■□□□□ 0.25
ACTN1-203ENST00000394419 CECR2Q9BXF3 1484 aa16.41■□□□□ 0.22
ACTN1-203ENST00000394419 ZEB1P37275 1124 aaPredicted RBP16.39■□□□□ 0.21
ACTN1-203ENST00000394419 RB1CC1Q8TDY2 1594 aa16.39■□□□□ 0.21
ACTN1-203ENST00000394419 CCER1Q8TC90 406 aaPredicted RBP16.35■□□□□ 0.21
ACTN1-203ENST00000394419 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.32■□□□□ 0.2
ACTN1-203ENST00000394419 PABPN1Q86U42 306 aaKnown RBP eCLIP16.31■□□□□ 0.2
ACTN1-203ENST00000394419 UBTFP17480 764 aaKnown RBP16.3■□□□□ 0.2
ACTN1-203ENST00000394419 RANGAP1P46060 587 aaPredicted RBP16.28■□□□□ 0.2
ACTN1-203ENST00000394419 MROH2BQ7Z745 1585 aa16.25■□□□□ 0.19
ACTN1-203ENST00000394419 NACADO15069 1562 aa16.17■□□□□ 0.18
ACTN1-203ENST00000394419 WIZO95785 1651 aa16.14■□□□□ 0.17
ACTN1-203ENST00000394419 APLP2Q06481 763 aa16.02■□□□□ 0.15
ACTN1-203ENST00000394419 HNRNPUL2Q1KMD3 747 aaKnown RBP16.01■□□□□ 0.15
ACTN1-203ENST00000394419 CSRNP3Q8WYN3 585 aa16■□□□□ 0.15
ACTN1-203ENST00000394419 ABCC8Q09428 1581 aa15.98■□□□□ 0.15
ACTN1-203ENST00000394419 BAZ1AQ9NRL2 1556 aaPredicted RBP15.95■□□□□ 0.14
ACTN1-203ENST00000394419 CCDC88BA6NC98 1476 aa15.93■□□□□ 0.14
ACTN1-203ENST00000394419 SOGA1O94964 1423 aa15.93■□□□□ 0.14
ACTN1-203ENST00000394419 DIEXFQ68CQ4 756 aaKnown RBP15.91■□□□□ 0.14
ACTN1-203ENST00000394419 YTHDC1Q96MU7 727 aaKnown RBP15.89■□□□□ 0.13
ACTN1-203ENST00000394419 CEP162Q5TB80 1403 aa15.87■□□□□ 0.13
ACTN1-203ENST00000394419 SCAF1Q9H7N4 1312 aaKnown RBP15.85■□□□□ 0.13
ACTN1-203ENST00000394419 CENPBP07199 599 aaPredicted RBP15.8■□□□□ 0.12
ACTN1-203ENST00000394419 RUSC2Q8N2Y8 1516 aa15.8■□□□□ 0.12
ACTN1-203ENST00000394419 PELP1Q8IZL8 1130 aaKnown RBP15.79■□□□□ 0.12
ACTN1-203ENST00000394419 TOP2AP11388 1531 aaKnown RBP15.76■□□□□ 0.11
ACTN1-203ENST00000394419 SMARCA4P51532 1647 aa15.74■□□□□ 0.11
ACTN1-203ENST00000394419 TNIKQ9UKE5 1360 aa15.73■□□□□ 0.11
ACTN1-203ENST00000394419 NEUROD1Q13562 356 aa15.73■□□□□ 0.11
ACTN1-203ENST00000394419 WRNQ14191 1432 aaPredicted RBP eCLIP15.72■□□□□ 0.11
ACTN1-203ENST00000394419 ITGAEP38570 1179 aa15.72■□□□□ 0.11
ACTN1-203ENST00000394419 ACIN1Q9UKV3 1341 aaKnown RBP15.69■□□□□ 0.1
ACTN1-203ENST00000394419 GTF3C3Q9Y5Q9 886 aa15.69■□□□□ 0.1
ACTN1-203ENST00000394419 SMARCA2P51531 1590 aa15.69■□□□□ 0.1
ACTN1-203ENST00000394419 ZNF316A6NFI3 1004 aaPredicted RBP15.67■□□□□ 0.1
ACTN1-203ENST00000394419 ATP1B4Q9UN42 357 aaPredicted RBP15.65■□□□□ 0.1
ACTN1-203ENST00000394419 GOLGA3Q08378 1498 aa15.65■□□□□ 0.1
ACTN1-203ENST00000394419 CLIP1P30622 1438 aa15.63■□□□□ 0.09
ACTN1-203ENST00000394419 EEA1Q15075 1411 aa15.62■□□□□ 0.09
ACTN1-203ENST00000394419 BAZ1BQ9UIG0 1483 aaKnown RBP15.57■□□□□ 0.08
ACTN1-203ENST00000394419 CEP164Q9UPV0 1460 aa15.53■□□□□ 0.08
ACTN1-203ENST00000394419 MIER1Q8N108 512 aa15.51■□□□□ 0.07
ACTN1-203ENST00000394419 EIF4G1Q04637 1599 aaKnown RBP15.5■□□□□ 0.07
ACTN1-203ENST00000394419 UNC13AQ9UPW8 1703 aa15.47■□□□□ 0.07
ACTN1-203ENST00000394419 ATAD2BQ9ULI0 1458 aa15.47■□□□□ 0.07
ACTN1-203ENST00000394419 RAPGEF2Q9Y4G8 1499 aa15.46■□□□□ 0.07
ACTN1-203ENST00000394419 P3H3Q8IVL6 736 aa15.45■□□□□ 0.06
ACTN1-203ENST00000394419 SYNJ1O43426 1573 aa15.42■□□□□ 0.06
ACTN1-203ENST00000394419 KANK4Q5T7N3 995 aaPredicted RBP15.41■□□□□ 0.06
ACTN1-203ENST00000394419 VPS8Q8N3P4 1428 aa15.41■□□□□ 0.06
ACTN1-203ENST00000394419 BICRAQ9NZM4 1560 aa15.4■□□□□ 0.06
ACTN1-203ENST00000394419 FAM50AQ14320 339 aaKnown RBP15.38■□□□□ 0.05
ACTN1-203ENST00000394419 KIF27Q86VH2 1401 aa15.27■□□□□ 0.03
ACTN1-203ENST00000394419 MYT1Q01538 1121 aa15.26■□□□□ 0.03
ACTN1-203ENST00000394419 KIF21BO75037 1637 aa15.23■□□□□ 0.03
ACTN1-203ENST00000394419 HIRIP3Q9BW71 556 aaPredicted RBP15.19■□□□□ 0.02
ACTN1-203ENST00000394419 CUX2O14529 1486 aa15.17■□□□□ 0.02
ACTN1-203ENST00000394419 PEG3Q9GZU2 1588 aa15.16■□□□□ 0.02
ACTN1-203ENST00000394419 DHX57Q6P158 1386 aaKnown RBP15.15■□□□□ 0.02
ACTN1-203ENST00000394419 CCNB3Q8WWL7 1395 aa15.15■□□□□ 0.02
ACTN1-203ENST00000394419 SIN3AQ96ST3 1273 aa15.14■□□□□ 0.01
ACTN1-203ENST00000394419 ARAP1Q96P48 1450 aa15.13■□□□□ 0.01
ACTN1-203ENST00000394419 DDX10Q13206 875 aaKnown RBP15.13■□□□□ 0.01
ACTN1-203ENST00000394419 ARID3CA6NKF2 412 aa15.11■□□□□ 0.01
ACTN1-203ENST00000394419 BCANQ96GW7 911 aa15.11■□□□□ 0.01
ACTN1-203ENST00000394419 TOP2BQ02880 1626 aa15.11■□□□□ 0.01
ACTN1-203ENST00000394419 CARMIL1Q5VZK9 1371 aa15.1■□□□□ 0.01
ACTN1-203ENST00000394419 PRXQ9BXM0 1461 aa15.09■□□□□ 0.01
ACTN1-203ENST00000394419 CUX1P39880 1505 aa15.08■□□□□ 0
ACTN1-203ENST00000394419 CLSPNQ9HAW4 1339 aa15.06■□□□□ 0
ACTN1-203ENST00000394419 NCAPD3P42695 1498 aa15.06■□□□□ 0
ACTN1-203ENST00000394419 RAB3GAP2Q9H2M9 1393 aa15.05■□□□□ -0
ACTN1-203ENST00000394419 KCNH8Q96L42 1107 aa15.04■□□□□ -0
ACTN1-203ENST00000394419 IGF1RP08069 1367 aa15.04■□□□□ -0
ACTN1-203ENST00000394419 ARHGAP35Q9NRY4 1499 aa15.01□□□□□ -0.01
ACTN1-203ENST00000394419 CADPSQ9ULU8 1353 aa15□□□□□ -0.01
ACTN1-203ENST00000394419 CFTRP13569 1480 aa14.99□□□□□ -0.01
ACTN1-203ENST00000394419 ERICH3Q5RHP9 1530 aa14.99□□□□□ -0.01
ACTN1-203ENST00000394419 TRIM52Q96A61 297 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms