Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
BLOC1S4Q9NUP1 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
BLOC1S4Q9NUP1 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
BLOC1S4Q9NUP1 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
BLOC1S4Q9NUP1 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
BLOC1S4Q9NUP1 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
BLOC1S4Q9NUP1 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC26.38■■□□□ 1.81
BLOC1S4Q9NUP1 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC26.38■■□□□ 1.81
BLOC1S4Q9NUP1 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
BLOC1S4Q9NUP1 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
BLOC1S4Q9NUP1 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC26.37■■□□□ 1.81
BLOC1S4Q9NUP1 LONRF2P2-201ENST00000439212 571 ntBASIC26.37■■□□□ 1.81
BLOC1S4Q9NUP1 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
BLOC1S4Q9NUP1 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC26.37■■□□□ 1.81
BLOC1S4Q9NUP1 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC26.37■■□□□ 1.81
BLOC1S4Q9NUP1 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC26.36■■□□□ 1.81
BLOC1S4Q9NUP1 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
BLOC1S4Q9NUP1 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
BLOC1S4Q9NUP1 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
BLOC1S4Q9NUP1 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC26.36■■□□□ 1.81
BLOC1S4Q9NUP1 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
BLOC1S4Q9NUP1 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
BLOC1S4Q9NUP1 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
BLOC1S4Q9NUP1 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
BLOC1S4Q9NUP1 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
BLOC1S4Q9NUP1 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC26.35■■□□□ 1.81
BLOC1S4Q9NUP1 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
BLOC1S4Q9NUP1 AC012354.3-201ENST00000623734 483 ntBASIC26.35■■□□□ 1.81
BLOC1S4Q9NUP1 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC26.35■■□□□ 1.81
BLOC1S4Q9NUP1 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
BLOC1S4Q9NUP1 TSPY13P-201ENST00000338964 914 ntBASIC26.34■■□□□ 1.81
BLOC1S4Q9NUP1 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
BLOC1S4Q9NUP1 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
BLOC1S4Q9NUP1 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC26.34■■□□□ 1.81
BLOC1S4Q9NUP1 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC26.34■■□□□ 1.81
BLOC1S4Q9NUP1 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
BLOC1S4Q9NUP1 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
BLOC1S4Q9NUP1 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
BLOC1S4Q9NUP1 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC26.33■■□□□ 1.81
BLOC1S4Q9NUP1 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
BLOC1S4Q9NUP1 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC26.33■■□□□ 1.81
BLOC1S4Q9NUP1 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC26.33■■□□□ 1.81
BLOC1S4Q9NUP1 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC26.33■■□□□ 1.81
BLOC1S4Q9NUP1 MIR6089-201ENST00000616698 64 ntBASIC26.33■■□□□ 1.81
BLOC1S4Q9NUP1 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
BLOC1S4Q9NUP1 AC135731.1-201ENST00000569415 2548 ntBASIC26.33■■□□□ 1.81
BLOC1S4Q9NUP1 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
BLOC1S4Q9NUP1 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
BLOC1S4Q9NUP1 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
BLOC1S4Q9NUP1 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC26.32■■□□□ 1.8
BLOC1S4Q9NUP1 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
BLOC1S4Q9NUP1 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
BLOC1S4Q9NUP1 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC26.32■■□□□ 1.8
BLOC1S4Q9NUP1 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC26.32■■□□□ 1.8
BLOC1S4Q9NUP1 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC26.32■■□□□ 1.8
BLOC1S4Q9NUP1 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC26.32■■□□□ 1.8
BLOC1S4Q9NUP1 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
BLOC1S4Q9NUP1 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
BLOC1S4Q9NUP1 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC26.31■■□□□ 1.8
BLOC1S4Q9NUP1 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC26.31■■□□□ 1.8
BLOC1S4Q9NUP1 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
BLOC1S4Q9NUP1 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC26.31■■□□□ 1.8
BLOC1S4Q9NUP1 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC26.31■■□□□ 1.8
BLOC1S4Q9NUP1 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
BLOC1S4Q9NUP1 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
BLOC1S4Q9NUP1 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC26.31■■□□□ 1.8
BLOC1S4Q9NUP1 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
BLOC1S4Q9NUP1 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC26.3■■□□□ 1.8
BLOC1S4Q9NUP1 GUK1-208ENST00000366728 842 ntTSL 2 BASIC26.3■■□□□ 1.8
BLOC1S4Q9NUP1 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC26.3■■□□□ 1.8
BLOC1S4Q9NUP1 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC26.3■■□□□ 1.8
BLOC1S4Q9NUP1 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
BLOC1S4Q9NUP1 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC26.3■■□□□ 1.8
BLOC1S4Q9NUP1 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC26.3■■□□□ 1.8
BLOC1S4Q9NUP1 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC26.29■■□□□ 1.8
BLOC1S4Q9NUP1 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
BLOC1S4Q9NUP1 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC26.29■■□□□ 1.8
BLOC1S4Q9NUP1 AL033527.3-201ENST00000566366 1196 ntBASIC26.29■■□□□ 1.8
BLOC1S4Q9NUP1 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
BLOC1S4Q9NUP1 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
BLOC1S4Q9NUP1 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
BLOC1S4Q9NUP1 LSR-205ENST00000427250 1606 ntTSL 2 BASIC26.28■■□□□ 1.8
BLOC1S4Q9NUP1 AP003733.4-201ENST00000623785 1697 ntBASIC26.28■■□□□ 1.8
BLOC1S4Q9NUP1 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
BLOC1S4Q9NUP1 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
BLOC1S4Q9NUP1 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
BLOC1S4Q9NUP1 PVT1_1.1-201ENST00000615125 194 ntBASIC26.28■■□□□ 1.8
BLOC1S4Q9NUP1 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC26.28■■□□□ 1.8
BLOC1S4Q9NUP1 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC26.28■■□□□ 1.8
BLOC1S4Q9NUP1 AL139125.2-201ENST00000623134 1869 ntBASIC26.28■■□□□ 1.8
BLOC1S4Q9NUP1 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC26.27■■□□□ 1.8
BLOC1S4Q9NUP1 HYI-210ENST00000486909 905 ntTSL 5 BASIC26.27■■□□□ 1.8
BLOC1S4Q9NUP1 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
BLOC1S4Q9NUP1 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC26.27■■□□□ 1.8
BLOC1S4Q9NUP1 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC26.27■■□□□ 1.8
BLOC1S4Q9NUP1 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
BLOC1S4Q9NUP1 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
BLOC1S4Q9NUP1 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC26.26■■□□□ 1.79
BLOC1S4Q9NUP1 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
BLOC1S4Q9NUP1 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms