Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC20.64■□□□□ 0.89
MMP28Q9H239 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MMP28Q9H239 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
MMP28Q9H239 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MMP28Q9H239 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
MMP28Q9H239 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MMP28Q9H239 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MMP28Q9H239 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MMP28Q9H239 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MMP28Q9H239 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MMP28Q9H239 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
MMP28Q9H239 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
MMP28Q9H239 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MMP28Q9H239 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
MMP28Q9H239 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MMP28Q9H239 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC20.62■□□□□ 0.89
MMP28Q9H239 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
MMP28Q9H239 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC20.62■□□□□ 0.89
MMP28Q9H239 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
MMP28Q9H239 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
MMP28Q9H239 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
MMP28Q9H239 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
MMP28Q9H239 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
MMP28Q9H239 AGPS-202ENST00000409888 815 ntTSL 4 BASIC20.62■□□□□ 0.89
MMP28Q9H239 RNF166-209ENST00000567844 633 ntTSL 5 BASIC20.62■□□□□ 0.89
MMP28Q9H239 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC20.62■□□□□ 0.89
MMP28Q9H239 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
MMP28Q9H239 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
MMP28Q9H239 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
MMP28Q9H239 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
MMP28Q9H239 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
MMP28Q9H239 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
MMP28Q9H239 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
MMP28Q9H239 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
MMP28Q9H239 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
MMP28Q9H239 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC20.61■□□□□ 0.89
MMP28Q9H239 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
MMP28Q9H239 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC20.61■□□□□ 0.89
MMP28Q9H239 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC20.61■□□□□ 0.89
MMP28Q9H239 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
MMP28Q9H239 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC20.61■□□□□ 0.89
MMP28Q9H239 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC20.61■□□□□ 0.89
MMP28Q9H239 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC20.61■□□□□ 0.89
MMP28Q9H239 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
MMP28Q9H239 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
MMP28Q9H239 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC20.61■□□□□ 0.89
MMP28Q9H239 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
MMP28Q9H239 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
MMP28Q9H239 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
MMP28Q9H239 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
MMP28Q9H239 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
MMP28Q9H239 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
MMP28Q9H239 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
MMP28Q9H239 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
MMP28Q9H239 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC20.59■□□□□ 0.89
MMP28Q9H239 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
MMP28Q9H239 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
MMP28Q9H239 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC20.59■□□□□ 0.89
MMP28Q9H239 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
MMP28Q9H239 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
MMP28Q9H239 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
MMP28Q9H239 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
MMP28Q9H239 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
MMP28Q9H239 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
MMP28Q9H239 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
MMP28Q9H239 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC20.58■□□□□ 0.89
MMP28Q9H239 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC20.58■□□□□ 0.89
MMP28Q9H239 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
MMP28Q9H239 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
MMP28Q9H239 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC20.58■□□□□ 0.89
MMP28Q9H239 PEX7-203ENST00000541292 945 ntTSL 5 BASIC20.58■□□□□ 0.89
MMP28Q9H239 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC20.58■□□□□ 0.88
MMP28Q9H239 AL117328.2-201ENST00000624617 1940 ntBASIC20.58■□□□□ 0.88
MMP28Q9H239 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
MMP28Q9H239 AL024507.2-201ENST00000606070 2574 ntBASIC20.58■□□□□ 0.88
MMP28Q9H239 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
MMP28Q9H239 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
MMP28Q9H239 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
MMP28Q9H239 CHST11-202ENST00000546689 756 ntTSL 2 BASIC20.57■□□□□ 0.88
MMP28Q9H239 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
MMP28Q9H239 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
MMP28Q9H239 STK25-234ENST00000535007 2459 ntTSL 2 BASIC20.56■□□□□ 0.88
MMP28Q9H239 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
MMP28Q9H239 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
MMP28Q9H239 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
MMP28Q9H239 MACF1-219ENST00000484793 834 ntTSL 2 BASIC20.56■□□□□ 0.88
MMP28Q9H239 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
MMP28Q9H239 AP003733.4-201ENST00000623785 1697 ntBASIC20.56■□□□□ 0.88
MMP28Q9H239 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
MMP28Q9H239 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
MMP28Q9H239 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
MMP28Q9H239 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
MMP28Q9H239 LINC00565-201ENST00000562710 2331 ntBASIC20.55■□□□□ 0.88
MMP28Q9H239 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
MMP28Q9H239 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
MMP28Q9H239 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
MMP28Q9H239 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
MMP28Q9H239 MIR639-201ENST00000384974 98 ntBASIC20.55■□□□□ 0.88
MMP28Q9H239 HES6-205ENST00000409356 528 ntTSL 2 BASIC20.55■□□□□ 0.88
MMP28Q9H239 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms