Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC30.31■■■□□ 2.44
RC3H1Q5TC82 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
RC3H1Q5TC82 EBPL-204ENST00000378272 766 ntTSL 3 BASIC30.3■■■□□ 2.44
RC3H1Q5TC82 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
RC3H1Q5TC82 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC30.3■■■□□ 2.44
RC3H1Q5TC82 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
RC3H1Q5TC82 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC30.29■■■□□ 2.44
RC3H1Q5TC82 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC30.29■■■□□ 2.44
RC3H1Q5TC82 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC30.28■■■□□ 2.44
RC3H1Q5TC82 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
RC3H1Q5TC82 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
RC3H1Q5TC82 AC106739.1-201ENST00000617035 715 ntBASIC30.28■■■□□ 2.44
RC3H1Q5TC82 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
RC3H1Q5TC82 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
RC3H1Q5TC82 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC30.27■■■□□ 2.44
RC3H1Q5TC82 TFPT-201ENST00000391757 774 ntTSL 5 BASIC30.27■■■□□ 2.44
RC3H1Q5TC82 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC30.27■■■□□ 2.44
RC3H1Q5TC82 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC30.27■■■□□ 2.44
RC3H1Q5TC82 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC30.27■■■□□ 2.44
RC3H1Q5TC82 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC30.26■■■□□ 2.44
RC3H1Q5TC82 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC30.26■■■□□ 2.44
RC3H1Q5TC82 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC30.26■■■□□ 2.43
RC3H1Q5TC82 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
RC3H1Q5TC82 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
RC3H1Q5TC82 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC30.25■■■□□ 2.43
RC3H1Q5TC82 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC30.25■■■□□ 2.43
RC3H1Q5TC82 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC30.24■■■□□ 2.43
RC3H1Q5TC82 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
RC3H1Q5TC82 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
RC3H1Q5TC82 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
RC3H1Q5TC82 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC30.23■■■□□ 2.43
RC3H1Q5TC82 ZNRF2P3-201ENST00000424200 374 ntBASIC30.23■■■□□ 2.43
RC3H1Q5TC82 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC30.23■■■□□ 2.43
RC3H1Q5TC82 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC30.23■■■□□ 2.43
RC3H1Q5TC82 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC30.23■■■□□ 2.43
RC3H1Q5TC82 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC30.23■■■□□ 2.43
RC3H1Q5TC82 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC30.23■■■□□ 2.43
RC3H1Q5TC82 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC30.22■■■□□ 2.43
RC3H1Q5TC82 CLTA-206ENST00000466396 695 ntTSL 2 BASIC30.22■■■□□ 2.43
RC3H1Q5TC82 PBX2P1-201ENST00000493219 1291 ntBASIC30.22■■■□□ 2.43
RC3H1Q5TC82 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC30.22■■■□□ 2.43
RC3H1Q5TC82 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
RC3H1Q5TC82 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
RC3H1Q5TC82 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
RC3H1Q5TC82 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
RC3H1Q5TC82 GUK1-205ENST00000366722 850 ntTSL 3 BASIC30.21■■■□□ 2.43
RC3H1Q5TC82 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC30.21■■■□□ 2.43
RC3H1Q5TC82 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC30.21■■■□□ 2.43
RC3H1Q5TC82 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC30.21■■■□□ 2.43
RC3H1Q5TC82 MIR6722-201ENST00000617286 78 ntBASIC30.21■■■□□ 2.43
RC3H1Q5TC82 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
RC3H1Q5TC82 AC139426.1-201ENST00000568218 2529 ntBASIC30.2■■■□□ 2.43
RC3H1Q5TC82 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC30.2■■■□□ 2.43
RC3H1Q5TC82 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC30.2■■■□□ 2.43
RC3H1Q5TC82 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC30.2■■■□□ 2.43
RC3H1Q5TC82 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC30.2■■■□□ 2.42
RC3H1Q5TC82 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC30.2■■■□□ 2.42
RC3H1Q5TC82 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC30.19■■■□□ 2.42
RC3H1Q5TC82 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
RC3H1Q5TC82 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
RC3H1Q5TC82 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
RC3H1Q5TC82 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC30.18■■■□□ 2.42
RC3H1Q5TC82 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
RC3H1Q5TC82 SNX5-217ENST00000606557 1087 ntBASIC30.18■■■□□ 2.42
RC3H1Q5TC82 AL031432.3-201ENST00000607698 485 ntBASIC30.18■■■□□ 2.42
RC3H1Q5TC82 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC30.18■■■□□ 2.42
RC3H1Q5TC82 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC30.18■■■□□ 2.42
RC3H1Q5TC82 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC30.18■■■□□ 2.42
RC3H1Q5TC82 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
RC3H1Q5TC82 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
RC3H1Q5TC82 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
RC3H1Q5TC82 RARRES2P6-201ENST00000567333 442 ntBASIC30.17■■■□□ 2.42
RC3H1Q5TC82 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
RC3H1Q5TC82 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
RC3H1Q5TC82 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
RC3H1Q5TC82 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC30.16■■■□□ 2.42
RC3H1Q5TC82 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC30.16■■■□□ 2.42
RC3H1Q5TC82 SUDS3P1-201ENST00000505831 966 ntBASIC30.16■■■□□ 2.42
RC3H1Q5TC82 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC30.16■■■□□ 2.42
RC3H1Q5TC82 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC30.16■■■□□ 2.42
RC3H1Q5TC82 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC30.16■■■□□ 2.42
RC3H1Q5TC82 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
RC3H1Q5TC82 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC30.15■■■□□ 2.42
RC3H1Q5TC82 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
RC3H1Q5TC82 AC142381.2-201ENST00000566120 298 ntBASIC30.15■■■□□ 2.42
RC3H1Q5TC82 FOXO3B-201ENST00000395675 1928 ntBASIC30.15■■■□□ 2.42
RC3H1Q5TC82 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
RC3H1Q5TC82 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC30.14■■■□□ 2.42
RC3H1Q5TC82 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
RC3H1Q5TC82 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
RC3H1Q5TC82 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC30.14■■■□□ 2.42
RC3H1Q5TC82 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
RC3H1Q5TC82 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC30.13■■■□□ 2.41
RC3H1Q5TC82 AC026271.2-201ENST00000428091 497 ntBASIC30.13■■■□□ 2.41
RC3H1Q5TC82 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC30.13■■■□□ 2.41
RC3H1Q5TC82 SHF-208ENST00000560734 1731 ntTSL 3 BASIC30.13■■■□□ 2.41
RC3H1Q5TC82 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
RC3H1Q5TC82 UNC93B3-201ENST00000308076 687 ntBASIC30.12■■■□□ 2.41
RC3H1Q5TC82 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC30.12■■■□□ 2.41
RC3H1Q5TC82 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC30.12■■■□□ 2.41
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms