Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 MATR3-202ENST00000502422 2250 ntTSL 1 (best)5.06□□□□□ -1.64e-6■■□□□ 11.5
LIN28BQ6ZN17 DTL-204ENST00000489149 815 ntTSL 24.97□□□□□ -1.614e-6■■□□□ 11.5
LIN28BQ6ZN17 DTL-203ENST00000475419 3662 ntTSL 24.38□□□□□ -1.714e-6■■□□□ 11.5
LIN28BQ6ZN17 PRKDC-210ENST00000541488 719 ntTSL 34.19□□□□□ -1.744e-6■■□□□ 11.5
LIN28BQ6ZN17 KLHL8-205ENST00000505388 606 ntTSL 44.17□□□□□ -1.744e-6■■□□□ 11.5
LIN28BQ6ZN17 DTL-205ENST00000496442 485 ntTSL 22.91□□□□□ -1.944e-6■■□□□ 11.5
LIN28BQ6ZN17 ZNF598-206ENST00000564824 2147 ntTSL 526.17■■□□□ 1.783e-6■■□□□ 11.5
LIN28BQ6ZN17 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.473e-6■■□□□ 11.5
LIN28BQ6ZN17 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.553e-6■■□□□ 11.5
LIN28BQ6ZN17 ZNF598-207ENST00000565396 4457 ntTSL 218.16■□□□□ 0.53e-6■■□□□ 11.5
LIN28BQ6ZN17 ZNF598-203ENST00000562988 3382 ntTSL 518.05■□□□□ 0.483e-6■■□□□ 11.5
LIN28BQ6ZN17 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC25.36■■□□□ 1.652e-10■■□□□ 11.5
LIN28BQ6ZN17 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.692e-10■■□□□ 11.5
LIN28BQ6ZN17 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC18.73■□□□□ 0.592e-10■■□□□ 11.5
LIN28BQ6ZN17 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC16.65■□□□□ 0.262e-10■■□□□ 11.5
LIN28BQ6ZN17 SEPT2-204ENST00000391973 3701 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.52e-10■■□□□ 11.5
LIN28BQ6ZN17 SEPT2-201ENST00000360051 3613 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.542e-10■■□□□ 11.5
LIN28BQ6ZN17 SEPT2-206ENST00000402092 3333 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.882e-10■■□□□ 11.5
LIN28BQ6ZN17 TMED10-204ENST00000555873 1161 ntTSL 1 (best)14.72□□□□□ -0.057e-9■■□□□ 11.5
LIN28BQ6ZN17 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC14.34□□□□□ -0.117e-9■■□□□ 11.5
LIN28BQ6ZN17 TMED10-206ENST00000557670 917 ntTSL 210.61□□□□□ -0.717e-9■■□□□ 11.5
LIN28BQ6ZN17 TTLL4-202ENST00000392102 4967 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.757e-9■■□□□ 11.5
LIN28BQ6ZN17 TTLL4-201ENST00000258398 4730 ntAPPRIS P1 TSL 2 BASIC8.31□□□□□ -1.087e-9■■□□□ 11.5
LIN28BQ6ZN17 TTLL4-210ENST00000442769 3971 ntTSL 5 BASIC7.73□□□□□ -1.177e-9■■□□□ 11.5
LIN28BQ6ZN17 TMED10-202ENST00000555036 888 ntTSL 1 (best)7.27□□□□□ -1.257e-9■■□□□ 11.5
LIN28BQ6ZN17 TMED10-205ENST00000556969 1314 ntTSL 25.79□□□□□ -1.487e-9■■□□□ 11.5
LIN28BQ6ZN17 EIF2S3-203ENST00000457332 215 ntTSL 54.16□□□□□ -1.744e-15■■□□□ 11.5
LIN28BQ6ZN17 PDIA4-202ENST00000413966 550 ntTSL 221.12■□□□□ 0.971e-8■■□□□ 11.5
LIN28BQ6ZN17 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC24.51■■□□□ 1.513e-10■■□□□ 11.5
LIN28BQ6ZN17 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.833e-10■■□□□ 11.5
LIN28BQ6ZN17 SDF4-205ENST00000465727 2095 ntTSL 218.12■□□□□ 0.493e-10■■□□□ 11.5
LIN28BQ6ZN17 SDF4-203ENST00000403997 728 ntTSL 315.12■□□□□ 0.013e-10■■□□□ 11.5
LIN28BQ6ZN17 ASNS-208ENST00000442734 828 ntTSL 217.44■□□□□ 0.381e-9■■□□□ 11.5
LIN28BQ6ZN17 ASNS-217ENST00000495255 1678 ntTSL 210.98□□□□□ -0.651e-9■■□□□ 11.5
LIN28BQ6ZN17 ASNS-207ENST00000437657 745 ntTSL 58.77□□□□□ -1.011e-9■■□□□ 11.5
LIN28BQ6ZN17 KIAA1551-207ENST00000541981 674 ntTSL 215.94■□□□□ 0.146e-10■■□□□ 11.5
LIN28BQ6ZN17 KIAA1551-203ENST00000397578 814 ntTSL 35.98□□□□□ -1.456e-10■■□□□ 11.5
LIN28BQ6ZN17 KIAA1551-204ENST00000535596 965 ntTSL 25.58□□□□□ -1.526e-10■■□□□ 11.5
LIN28BQ6ZN17 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.26e-10■■□□□ 11.5
LIN28BQ6ZN17 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.487e-7■■□□□ 11.5
LIN28BQ6ZN17 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.857e-7■■□□□ 11.5
LIN28BQ6ZN17 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC14.43□□□□□ -0.12e-10■■□□□ 11.5
LIN28BQ6ZN17 HNRNPU-212ENST00000638230 1922 ntTSL 511.3□□□□□ -0.62e-10■■□□□ 11.5
LIN28BQ6ZN17 HNRNPU-224ENST00000640056 2045 ntTSL 510.04□□□□□ -0.82e-10■■□□□ 11.5
LIN28BQ6ZN17 HNRNPU-216ENST00000638716 2640 ntTSL 5 BASIC9.18□□□□□ -0.942e-10■■□□□ 11.5
LIN28BQ6ZN17 HNRNPU-202ENST00000366525 2851 ntTSL 58.68□□□□□ -1.022e-10■■□□□ 11.5
LIN28BQ6ZN17 HNRNPU-219ENST00000639628 4546 ntTSL 1 (best) BASIC8.24□□□□□ -1.092e-10■■□□□ 11.5
LIN28BQ6ZN17 HNRNPU-222ENST00000639880 4239 ntTSL 58.11□□□□□ -1.112e-10■■□□□ 11.5
LIN28BQ6ZN17 HNRNPU-223ENST00000640001 4227 ntTSL 5 BASIC7.71□□□□□ -1.182e-10■■□□□ 11.5
LIN28BQ6ZN17 HNRNPU-213ENST00000638301 3650 ntTSL 56.44□□□□□ -1.382e-10■■□□□ 11.5
LIN28BQ6ZN17 ERBB2-213ENST00000582818 529 ntTSL 316.07■□□□□ 0.163e-7■■□□□ 11.5
LIN28BQ6ZN17 ERBB2-210ENST00000580074 754 ntTSL 313.2□□□□□ -0.33e-7■■□□□ 11.5
LIN28BQ6ZN17 ERBB2-208ENST00000578630 874 ntTSL 212.75□□□□□ -0.373e-7■■□□□ 11.5
LIN28BQ6ZN17 NORAD-201ENST00000565493 5339 ntBASIC14.94□□□□□ -0.027e-9■■□□□ 11.5
LIN28BQ6ZN17 LARP1-204ENST00000518297 2630 ntTSL 520.41■□□□□ 0.864e-7■■□□□ 11.5
LIN28BQ6ZN17 VARS-216ENST00000428445 863 ntTSL 519.25■□□□□ 0.677e-7■■□□□ 11.5
LIN28BQ6ZN17 VARS-223ENST00000474643 885 ntTSL 517.21■□□□□ 0.357e-7■■□□□ 11.5
LIN28BQ6ZN17 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -08e-7■■□□□ 11.5
LIN28BQ6ZN17 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.18e-7■■□□□ 11.5
LIN28BQ6ZN17 KDM3A-205ENST00000441719 8741 ntTSL 210.45□□□□□ -0.748e-7■■□□□ 11.5
LIN28BQ6ZN17 KDM3A-202ENST00000409064 4621 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.788e-7■■□□□ 11.5
LIN28BQ6ZN17 LARP4B-202ENST00000406525 681 ntTSL 530.45■■■□□ 2.473e-9■■□□□ 11.5
LIN28BQ6ZN17 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.723e-9■■□□□ 11.5
LIN28BQ6ZN17 LARP4B-207ENST00000476529 613 ntTSL 316.87■□□□□ 0.293e-9■■□□□ 11.5
LIN28BQ6ZN17 FUBP3-205ENST00000487406 840 ntTSL 515.43■□□□□ 0.063e-9■■□□□ 11.5
LIN28BQ6ZN17 LARP4B-208ENST00000481118 421 ntTSL 313.97□□□□□ -0.173e-9■■□□□ 11.5
LIN28BQ6ZN17 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC18.32■□□□□ 0.529e-8■■□□□ 11.5
LIN28BQ6ZN17 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC17.34■□□□□ 0.379e-8■■□□□ 11.5
LIN28BQ6ZN17 MDM2-204ENST00000311420 1583 ntTSL 512.44□□□□□ -0.429e-8■■□□□ 11.5
LIN28BQ6ZN17 MDM2-202ENST00000258149 12633 ntAPPRIS P2 TSL 1 (best) BASIC8□□□□□ -1.139e-8■■□□□ 11.5
LIN28BQ6ZN17 RAB10-204ENST00000495146 1292 ntTSL 526.74■■□□□ 1.877e-8■■□□□ 11.5
LIN28BQ6ZN17 RAB10-203ENST00000473035 571 ntTSL 47.97□□□□□ -1.137e-8■■□□□ 11.5
LIN28BQ6ZN17 RAB10-202ENST00000462003 584 ntTSL 47.43□□□□□ -1.227e-8■■□□□ 11.5
LIN28BQ6ZN17 MCM7-204ENST00000425308 1497 ntTSL 330.86■■■□□ 2.531e-6■■□□□ 11.5
LIN28BQ6ZN17 MCM7-206ENST00000465688 481 ntTSL 320.63■□□□□ 0.891e-6■■□□□ 11.5
LIN28BQ6ZN17 MCM7-208ENST00000467516 776 ntTSL 212.55□□□□□ -0.41e-6■■□□□ 11.5
LIN28BQ6ZN17 MCM7-205ENST00000463722 1327 ntTSL 512.39□□□□□ -0.431e-6■■□□□ 11.5
LIN28BQ6ZN17 MCM7-207ENST00000465738 448 ntTSL 210.72□□□□□ -0.691e-6■■□□□ 11.5
LIN28BQ6ZN17 KIAA0319L-215ENST00000478463 1489 ntTSL 225.51■■□□□ 1.673e-8■■□□□ 11.5
LIN28BQ6ZN17 KIAA0319L-209ENST00000470388 872 ntTSL 520.11■□□□□ 0.813e-8■■□□□ 11.5
LIN28BQ6ZN17 KIAA0319L-216ENST00000482929 1524 ntTSL 219.8■□□□□ 0.763e-8■■□□□ 11.5
LIN28BQ6ZN17 KIAA0319L-214ENST00000476329 570 ntTSL 419.36■□□□□ 0.693e-8■■□□□ 11.5
LIN28BQ6ZN17 KIAA0319L-219ENST00000492888 872 ntTSL 318.93■□□□□ 0.623e-8■■□□□ 11.5
LIN28BQ6ZN17 KIAA0319L-208ENST00000469892 889 ntTSL 513.97□□□□□ -0.173e-8■■□□□ 11.5
LIN28BQ6ZN17 KIAA0319L-220ENST00000494948 766 ntTSL 410.38□□□□□ -0.753e-8■■□□□ 11.5
LIN28BQ6ZN17 HDAC2-203ENST00000518690 564 ntTSL 525.28■■□□□ 1.641e-6■■□□□ 11.4
LIN28BQ6ZN17 HDAC2-214ENST00000523240 557 ntTSL 525.28■■□□□ 1.641e-6■■□□□ 11.4
LIN28BQ6ZN17 OPA1-207ENST00000392437 631 ntTSL 323.9■■□□□ 1.428e-9■■□□□ 11.4
LIN28BQ6ZN17 OPA1-209ENST00000419435 780 ntTSL 321.81■■□□□ 1.088e-9■■□□□ 11.4
LIN28BQ6ZN17 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.32■□□□□ 0.528e-9■■□□□ 11.4
LIN28BQ6ZN17 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.478e-9■■□□□ 11.4
LIN28BQ6ZN17 KANSL1-225ENST00000639356 1717 ntTSL 517.58■□□□□ 0.418e-9■■□□□ 11.4
LIN28BQ6ZN17 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC17.57■□□□□ 0.49e-7■■□□□ 11.4
LIN28BQ6ZN17 NADK-203ENST00000342348 1722 ntAPPRIS ALT2 TSL 217.27■□□□□ 0.359e-7■■□□□ 11.4
LIN28BQ6ZN17 KANSL1-209ENST00000574655 1681 ntTSL 517.22■□□□□ 0.358e-9■■□□□ 11.4
LIN28BQ6ZN17 OPA1-206ENST00000392436 757 ntTSL 317.1■□□□□ 0.338e-9■■□□□ 11.4
LIN28BQ6ZN17 KANSL1-222ENST00000639099 1724 ntTSL 516.87■□□□□ 0.298e-9■■□□□ 11.4
LIN28BQ6ZN17 KANSL1-223ENST00000639150 1815 ntTSL 516.48■□□□□ 0.238e-9■■□□□ 11.4
LIN28BQ6ZN17 KANSL1-203ENST00000571698 2276 ntTSL 514.8□□□□□ -0.048e-9■■□□□ 11.4
LIN28BQ6ZN17 KANSL1-221ENST00000638902 1971 ntTSL 214.31□□□□□ -0.128e-9■■□□□ 11.4
Retrieved 100 of 21,972 protein–RNA pairs in 330.3 ms