RNA–Protein interactions for RNA: ENST00000502422.5

MATR3-202, Transcript of matrin 3, humanhuman

TSL 1 (best)

Gene MATR3, Length 2,250 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MATR3-202ENST00000502422 AEBP2Q6ZN18 517 aaPredicted RBP12.77□□□□□ -0.36
MATR3-202ENST00000502422 CHIC1Q5VXU3 224 aa12.23□□□□□ -0.45
MATR3-202ENST00000502422 SENP3Q9H4L4 574 aaPredicted RBP11.3□□□□□ -0.6
MATR3-202ENST00000502422 POTEDQ86YR6 584 aa11.25□□□□□ -0.61
MATR3-202ENST00000502422 PHF23Q9BUL5 403 aaPredicted RBP10.91□□□□□ -0.66
MATR3-202ENST00000502422 NISCHQ9Y2I1 1504 aa10.85□□□□□ -0.67
MATR3-202ENST00000502422 FOXD1Q16676 465 aa10.45□□□□□ -0.74
MATR3-202ENST00000502422 MSH5O43196 834 aa10.33□□□□□ -0.76
MATR3-202ENST00000502422 ABCC9O60706 1549 aa10.09□□□□□ -0.79
MATR3-202ENST00000502422 PLPPR3Q6T4P5 718 aa9.99□□□□□ -0.81
MATR3-202ENST00000502422 CCDC180Q9P1Z9 1646 aa9.86□□□□□ -0.83
MATR3-202ENST00000502422 DNAJC5BQ9UF47 199 aa9.65□□□□□ -0.86
MATR3-202ENST00000502422 DNAJC5Q9H3Z4 198 aa9.61□□□□□ -0.87
MATR3-202ENST00000502422 PIAS4Q8N2W9 510 aaPredicted RBP9.6□□□□□ -0.87
MATR3-202ENST00000502422 RB1CC1Q8TDY2 1594 aa9.52□□□□□ -0.88
MATR3-202ENST00000502422 PPP6R1Q9UPN7 881 aa9.49□□□□□ -0.89
MATR3-202ENST00000502422 ADRA2BP18089 450 aa9.47□□□□□ -0.89
MATR3-202ENST00000502422 SHROOM4Q9ULL8 1493 aa9.43□□□□□ -0.9
MATR3-202ENST00000502422 DCAF8L2P0C7V8 631 aa9.4□□□□□ -0.9
MATR3-202ENST00000502422 PABPN1Q86U42 306 aaKnown RBP eCLIP9.39□□□□□ -0.91
MATR3-202ENST00000502422 NACADO15069 1562 aa9.38□□□□□ -0.91
MATR3-202ENST00000502422 UNC13AQ9UPW8 1703 aa9.25□□□□□ -0.93
MATR3-202ENST00000502422 CACNB1Q02641 598 aaPredicted RBP9.24□□□□□ -0.93
MATR3-202ENST00000502422 MYO15BQ96JP2 1530 aa9.24□□□□□ -0.93
MATR3-202ENST00000502422 CUX2O14529 1486 aa9.19□□□□□ -0.94
MATR3-202ENST00000502422 BICRAQ9NZM4 1560 aa9.18□□□□□ -0.94
MATR3-202ENST00000502422 CECR2Q9BXF3 1484 aa9.12□□□□□ -0.95
MATR3-202ENST00000502422 CC2D2AQ9P2K1 1620 aa9.09□□□□□ -0.95
MATR3-202ENST00000502422 EIF4G1Q04637 1599 aaKnown RBP9.01□□□□□ -0.97
MATR3-202ENST00000502422 SCRIBQ14160 1630 aa8.97□□□□□ -0.97
MATR3-202ENST00000502422 KCNA4P22459 653 aa8.93□□□□□ -0.98
MATR3-202ENST00000502422 DCAF1Q9Y4B6 1507 aa8.93□□□□□ -0.98
MATR3-202ENST00000502422 ZCCHC6Q5VYS8 1495 aaKnown RBP8.93□□□□□ -0.98
MATR3-202ENST00000502422 PPP4R3CPQ6ZMV5 832 aa8.87□□□□□ -0.99
MATR3-202ENST00000502422 DMRT2Q9Y5R5 561 aa8.79□□□□□ -1
MATR3-202ENST00000502422 ERCC6Q03468 1493 aa8.76□□□□□ -1.01
MATR3-202ENST00000502422 POTEHQ6S545 545 aa8.69□□□□□ -1.02
MATR3-202ENST00000502422 NCAPD3P42695 1498 aa8.64□□□□□ -1.03
MATR3-202ENST00000502422 NCBP3Q53F19 620 aaKnown RBP8.63□□□□□ -1.03
MATR3-202ENST00000502422 TRIM41Q8WV44 630 aa8.63□□□□□ -1.03
MATR3-202ENST00000502422 RNF39Q9H2S5 420 aa8.6□□□□□ -1.03
MATR3-202ENST00000502422 NESP48681 1621 aa8.59□□□□□ -1.03
MATR3-202ENST00000502422 ATAD2BQ9ULI0 1458 aa8.58□□□□□ -1.04
MATR3-202ENST00000502422 THOC2Q8NI27 1593 aaKnown RBP8.58□□□□□ -1.04
MATR3-202ENST00000502422 NPM3O75607 178 aaKnown RBP8.58□□□□□ -1.04
MATR3-202ENST00000502422 SCAF1Q9H7N4 1312 aaKnown RBP8.58□□□□□ -1.04
MATR3-202ENST00000502422 SMARCA2P51531 1590 aa8.56□□□□□ -1.04
MATR3-202ENST00000502422 C1QBPQ07021 282 aaKnown RBP8.55□□□□□ -1.04
MATR3-202ENST00000502422 MAPK8IP2Q13387 824 aaPredicted RBP8.55□□□□□ -1.04
MATR3-202ENST00000502422 HMGXB3Q12766 1538 aa8.55□□□□□ -1.04
MATR3-202ENST00000502422 CNKSR2Q8WXI2 1034 aa8.54□□□□□ -1.04
MATR3-202ENST00000502422 EHMT2Q96KQ7 1210 aa8.54□□□□□ -1.04
MATR3-202ENST00000502422 LAMC3Q9Y6N6 1575 aa8.52□□□□□ -1.04
MATR3-202ENST00000502422 BAZ1BQ9UIG0 1483 aaKnown RBP8.52□□□□□ -1.05
MATR3-202ENST00000502422 SMARCA4P51532 1647 aa8.51□□□□□ -1.05
MATR3-202ENST00000502422 SLC4A1APQ9BWU0 796 aaKnown RBP8.51□□□□□ -1.05
MATR3-202ENST00000502422 PDS5BQ9NTI5 1447 aa8.48□□□□□ -1.05
MATR3-202ENST00000502422 KIF21AQ7Z4S6 1674 aa8.47□□□□□ -1.05
MATR3-202ENST00000502422 BAZ1AQ9NRL2 1556 aaPredicted RBP8.47□□□□□ -1.05
MATR3-202ENST00000502422 OSCARQ8IYS5 282 aa8.42□□□□□ -1.06
MATR3-202ENST00000502422 PEG3Q9GZU2 1588 aa8.41□□□□□ -1.06
MATR3-202ENST00000502422 WDR62O43379 1518 aa8.4□□□□□ -1.06
MATR3-202ENST00000502422 CADPSQ9ULU8 1353 aa8.39□□□□□ -1.07
MATR3-202ENST00000502422 MRC2Q9UBG0 1479 aa8.39□□□□□ -1.07
MATR3-202ENST00000502422 CSRNP3Q8WYN3 585 aa8.37□□□□□ -1.07
MATR3-202ENST00000502422 RIMBP3CA6NJZ7 1639 aa8.36□□□□□ -1.07
MATR3-202ENST00000502422 RIMBP3BA6NNM3 1639 aa8.36□□□□□ -1.07
MATR3-202ENST00000502422 RIMBP3Q9UFD9 1639 aa8.36□□□□□ -1.07
MATR3-202ENST00000502422 MROH2BQ7Z745 1585 aa8.36□□□□□ -1.07
MATR3-202ENST00000502422 DCAF8L1A6NGE4 600 aa8.35□□□□□ -1.07
MATR3-202ENST00000502422 CEP164Q9UPV0 1460 aa8.33□□□□□ -1.08
MATR3-202ENST00000502422 RNF216Q9NWF9 866 aaPredicted RBP8.32□□□□□ -1.08
MATR3-202ENST00000502422 FANCD2Q9BXW9 1451 aa8.29□□□□□ -1.08
MATR3-202ENST00000502422 ARHGEF11O15085 1522 aa8.28□□□□□ -1.08
MATR3-202ENST00000502422 RSF1Q96T23 1441 aaPredicted RBP8.27□□□□□ -1.09
MATR3-202ENST00000502422 WIZO95785 1651 aa8.26□□□□□ -1.09
MATR3-202ENST00000502422 ZBTB22O15209 634 aa8.26□□□□□ -1.09
MATR3-202ENST00000502422 TRHP20396 242 aaPredicted RBP8.25□□□□□ -1.09
MATR3-202ENST00000502422 HOXD11P31277 338 aaPredicted RBP8.24□□□□□ -1.09
MATR3-202ENST00000502422 CYB5RLQ6IPT4 315 aa8.23□□□□□ -1.09
MATR3-202ENST00000502422 CFTRP13569 1480 aa8.23□□□□□ -1.09
MATR3-202ENST00000502422 URB2Q14146 1524 aaKnown RBP8.21□□□□□ -1.09
MATR3-202ENST00000502422 IFT140Q96RY7 1462 aa8.16□□□□□ -1.1
MATR3-202ENST00000502422 ZNF608Q9ULD9 1512 aaPredicted RBP8.16□□□□□ -1.1
MATR3-202ENST00000502422 FBLN2P98095 1184 aa8.15□□□□□ -1.1
MATR3-202ENST00000502422 ARAP1Q96P48 1450 aa8.13□□□□□ -1.11
MATR3-202ENST00000502422 TOP2AP11388 1531 aaKnown RBP8.12□□□□□ -1.11
MATR3-202ENST00000502422 PRDM2Q13029 1718 aa8.12□□□□□ -1.11
MATR3-202ENST00000502422 ILDR1Q86SU0 546 aaPredicted RBP8.12□□□□□ -1.11
MATR3-202ENST00000502422 ERCC6L2Q5T890 1561 aa8.12□□□□□ -1.11
MATR3-202ENST00000502422 WDR97A6NE52 1622 aa8.11□□□□□ -1.11
MATR3-202ENST00000502422 FOXD4L1Q9NU39 408 aa8.11□□□□□ -1.11
MATR3-202ENST00000502422 EIF4G3O43432 1585 aaKnown RBP8.1□□□□□ -1.11
MATR3-202ENST00000502422 TOPBP1Q92547 1522 aa8.1□□□□□ -1.11
MATR3-202ENST00000502422 CHD1O14646 1710 aa8.09□□□□□ -1.11
MATR3-202ENST00000502422 ABCC8Q09428 1581 aa8.09□□□□□ -1.11
MATR3-202ENST00000502422 AQRO60306 1485 aaKnown RBP eCLIP8.09□□□□□ -1.125e-10■■■□□ 16.4
MATR3-202ENST00000502422 SLC4A2P04920 1241 aa8.07□□□□□ -1.12
MATR3-202ENST00000502422 CCDC88BA6NC98 1476 aa8.05□□□□□ -1.12
MATR3-202ENST00000502422 DNMBPQ6XZF7 1577 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms