RNA–Protein interactions for RNA: ENST00000474643.5

VARS-223, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 885 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-223ENST00000474643 NISCHQ9Y2I1 1504 aa37.17■■■■□ 3.54
VARS-223ENST00000474643 CCDC180Q9P1Z9 1646 aa33.3■■■□□ 2.92
VARS-223ENST00000474643 ABCC9O60706 1549 aa33.17■■■□□ 2.9
VARS-223ENST00000474643 RB1CC1Q8TDY2 1594 aa31.66■■■□□ 2.66
VARS-223ENST00000474643 DCAF8L2P0C7V8 631 aa31.52■■■□□ 2.64
VARS-223ENST00000474643 NACADO15069 1562 aa31.45■■■□□ 2.63
VARS-223ENST00000474643 MYO15BQ96JP2 1530 aa30.99■■■□□ 2.55
VARS-223ENST00000474643 PABPN1Q86U42 306 aaKnown RBP eCLIP30.91■■■□□ 2.54
VARS-223ENST00000474643 ZCCHC6Q5VYS8 1495 aaKnown RBP30.84■■■□□ 2.53
VARS-223ENST00000474643 UNC13AQ9UPW8 1703 aa30.81■■■□□ 2.52
VARS-223ENST00000474643 DNAJC5BQ9UF47 199 aa30.77■■■□□ 2.52
VARS-223ENST00000474643 DCAF1Q9Y4B6 1507 aa30.68■■■□□ 2.5
VARS-223ENST00000474643 BICRAQ9NZM4 1560 aa30.58■■■□□ 2.49
VARS-223ENST00000474643 SCRIBQ14160 1630 aa30.43■■■□□ 2.46
VARS-223ENST00000474643 SHROOM4Q9ULL8 1493 aa30.29■■■□□ 2.44
VARS-223ENST00000474643 CC2D2AQ9P2K1 1620 aa29.92■■■□□ 2.38
VARS-223ENST00000474643 EIF4G1Q04637 1599 aaKnown RBP29.9■■■□□ 2.38
VARS-223ENST00000474643 CECR2Q9BXF3 1484 aa29.86■■■□□ 2.37
VARS-223ENST00000474643 SMARCA4P51532 1647 aa28.98■■■□□ 2.23
VARS-223ENST00000474643 NCAPD3P42695 1498 aa28.97■■■□□ 2.23
VARS-223ENST00000474643 SMARCA2P51531 1590 aa28.94■■■□□ 2.22
VARS-223ENST00000474643 ATAD2BQ9ULI0 1458 aa28.93■■■□□ 2.22
VARS-223ENST00000474643 BAZ1AQ9NRL2 1556 aaPredicted RBP28.91■■■□□ 2.22
VARS-223ENST00000474643 HMGXB3Q12766 1538 aa28.82■■■□□ 2.2
VARS-223ENST00000474643 BAZ1BQ9UIG0 1483 aaKnown RBP28.77■■■□□ 2.2
VARS-223ENST00000474643 ERCC6Q03468 1493 aa28.73■■■□□ 2.19
VARS-223ENST00000474643 PEG3Q9GZU2 1588 aa28.63■■■□□ 2.17
VARS-223ENST00000474643 MROH2BQ7Z745 1585 aa28.62■■■□□ 2.17
VARS-223ENST00000474643 CUX2O14529 1486 aa28.49■■■□□ 2.15
VARS-223ENST00000474643 NESP48681 1621 aa28.48■■■□□ 2.15
VARS-223ENST00000474643 LAMC3Q9Y6N6 1575 aa28.37■■■□□ 2.13
VARS-223ENST00000474643 WIZO95785 1651 aa28.32■■■□□ 2.12
VARS-223ENST00000474643 PDS5BQ9NTI5 1447 aa28.25■■■□□ 2.11
VARS-223ENST00000474643 DNAJC5Q9H3Z4 198 aa28.2■■■□□ 2.1
VARS-223ENST00000474643 CADPSQ9ULU8 1353 aa28.15■■■□□ 2.1
VARS-223ENST00000474643 KIF21AQ7Z4S6 1674 aa28.15■■■□□ 2.1
VARS-223ENST00000474643 THOC2Q8NI27 1593 aaKnown RBP28.15■■■□□ 2.1
VARS-223ENST00000474643 RSF1Q96T23 1441 aaPredicted RBP28.11■■■□□ 2.09
VARS-223ENST00000474643 TOP2AP11388 1531 aaKnown RBP28.01■■■□□ 2.07
VARS-223ENST00000474643 MRC2Q9UBG0 1479 aa27.95■■■□□ 2.07
VARS-223ENST00000474643 CEP164Q9UPV0 1460 aa27.92■■■□□ 2.06
VARS-223ENST00000474643 FANCD2Q9BXW9 1451 aa27.87■■■□□ 2.05
VARS-223ENST00000474643 CFTRP13569 1480 aa27.84■■■□□ 2.05
VARS-223ENST00000474643 WDR62O43379 1518 aa27.82■■■□□ 2.04
VARS-223ENST00000474643 CCDC88BA6NC98 1476 aa27.66■■■□□ 2.02
VARS-223ENST00000474643 PRDM2Q13029 1718 aa27.61■■■□□ 2.01
VARS-223ENST00000474643 URB2Q14146 1524 aaKnown RBP27.57■■■□□ 2
VARS-223ENST00000474643 ABCC8Q09428 1581 aa27.34■■□□□ 1.97
VARS-223ENST00000474643 TOPBP1Q92547 1522 aa27.33■■□□□ 1.97
VARS-223ENST00000474643 IFT140Q96RY7 1462 aa27.32■■□□□ 1.96
VARS-223ENST00000474643 DNMBPQ6XZF7 1577 aa27.27■■□□□ 1.96
VARS-223ENST00000474643 OSCARQ8IYS5 282 aa27.26■■□□□ 1.95
VARS-223ENST00000474643 TRIM41Q8WV44 630 aa27.23■■□□□ 1.95
VARS-223ENST00000474643 SUPT5HO00267 1087 aaKnown RBP27.2■■□□□ 1.94
VARS-223ENST00000474643 ZNF608Q9ULD9 1512 aaPredicted RBP27.2■■□□□ 1.94
VARS-223ENST00000474643 EIF4G3O43432 1585 aaKnown RBP27.11■■□□□ 1.93
VARS-223ENST00000474643 POLA1P09884 1462 aaPredicted RBP27.06■■□□□ 1.92
VARS-223ENST00000474643 TARBP1Q13395 1621 aaKnown RBP27.02■■□□□ 1.92
VARS-223ENST00000474643 AQRO60306 1485 aaKnown RBP eCLIP27■■□□□ 1.917e-7■■■■■ 32.1
VARS-223ENST00000474643 SOGA1O94964 1423 aa26.99■■□□□ 1.91
VARS-223ENST00000474643 RAD54L2Q9Y4B4 1467 aa26.96■■□□□ 1.91
VARS-223ENST00000474643 FBLN2P98095 1184 aa26.96■■□□□ 1.91
VARS-223ENST00000474643 FGD5Q6ZNL6 1462 aa26.95■■□□□ 1.91
VARS-223ENST00000474643 CUX1P39880 1505 aa26.9■■□□□ 1.9
VARS-223ENST00000474643 TDRD9Q8NDG6 1382 aaKnown RBP26.9■■□□□ 1.9
VARS-223ENST00000474643 CHD1O14646 1710 aa26.86■■□□□ 1.89
VARS-223ENST00000474643 WDR97A6NE52 1622 aa26.83■■□□□ 1.88
VARS-223ENST00000474643 RIMBP3CA6NJZ7 1639 aa26.83■■□□□ 1.88
VARS-223ENST00000474643 RIMBP3BA6NNM3 1639 aa26.83■■□□□ 1.88
VARS-223ENST00000474643 RIMBP3Q9UFD9 1639 aa26.83■■□□□ 1.88
VARS-223ENST00000474643 SNAPC4Q5SXM2 1469 aa26.78■■□□□ 1.88
VARS-223ENST00000474643 ARHGEF11O15085 1522 aa26.78■■□□□ 1.88
VARS-223ENST00000474643 CHMP7Q8WUX9 453 aaPredicted RBP26.75■■□□□ 1.87
VARS-223ENST00000474643 GRIN2BQ13224 1484 aa26.74■■□□□ 1.87
VARS-223ENST00000474643 MAGI1Q96QZ7 1491 aaPredicted RBP26.71■■□□□ 1.87
VARS-223ENST00000474643 GAPVD1Q14C86 1478 aa26.66■■□□□ 1.86
VARS-223ENST00000474643 CYB5RLQ6IPT4 315 aa26.64■■□□□ 1.86
VARS-223ENST00000474643 WRNQ14191 1432 aaPredicted RBP eCLIP26.64■■□□□ 1.85
VARS-223ENST00000474643 PBRM1Q86U86 1689 aa26.63■■□□□ 1.85
VARS-223ENST00000474643 SYNJ1O43426 1573 aa26.63■■□□□ 1.85
VARS-223ENST00000474643 ABCA10Q8WWZ4 1543 aa26.62■■□□□ 1.85
VARS-223ENST00000474643 SYNJ2O15056 1496 aa26.62■■□□□ 1.85
VARS-223ENST00000474643 TOP2BQ02880 1626 aa26.55■■□□□ 1.84
VARS-223ENST00000474643 ABCA5Q8WWZ7 1642 aa26.54■■□□□ 1.84
VARS-223ENST00000474643 BIVM-ERCC5R4GMW8 1640 aa26.54■■□□□ 1.84
VARS-223ENST00000474643 CLASP1Q7Z460 1538 aa26.5■■□□□ 1.83
VARS-223ENST00000474643 ARAP1Q96P48 1450 aa26.5■■□□□ 1.83
VARS-223ENST00000474643 TRHP20396 242 aaPredicted RBP26.39■■□□□ 1.82
VARS-223ENST00000474643 ADAMTS12P58397 1594 aa26.37■■□□□ 1.81
VARS-223ENST00000474643 GRIN2AQ12879 1464 aa26.37■■□□□ 1.81
VARS-223ENST00000474643 FHAD1B1AJZ9 1412 aa26.32■■□□□ 1.8
VARS-223ENST00000474643 ERICH3Q5RHP9 1530 aa26.32■■□□□ 1.8
VARS-223ENST00000474643 CEP170Q5SW79 1584 aa26.24■■□□□ 1.79
VARS-223ENST00000474643 NUP160Q12769 1436 aa26.22■■□□□ 1.79
VARS-223ENST00000474643 KIF27Q86VH2 1401 aa26.13■■□□□ 1.77
VARS-223ENST00000474643 ERCC6L2Q5T890 1561 aa26.1■■□□□ 1.77
VARS-223ENST00000474643 SHROOM2Q13796 1616 aa26.06■■□□□ 1.76
VARS-223ENST00000474643 PRG4Q92954 1404 aaPredicted RBP26.04■■□□□ 1.76
VARS-223ENST00000474643 CUL7Q14999 1698 aa26.01■■□□□ 1.75
VARS-223ENST00000474643 JPH4Q96JJ6 628 aa26.01■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms