RNA–Protein interactions for RNA: ENST00000403997.2

SDF4-203, Transcript of stromal cell derived factor 4, humanhuman

TSL 3

Gene SDF4, Length 728 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-203ENST00000403997 NISCHQ9Y2I1 1504 aa32.66■■■□□ 2.82
SDF4-203ENST00000403997 CCDC180Q9P1Z9 1646 aa29.08■■■□□ 2.25
SDF4-203ENST00000403997 ABCC9O60706 1549 aa28.89■■■□□ 2.22
SDF4-203ENST00000403997 DCAF8L2P0C7V8 631 aa27.61■■■□□ 2.01
SDF4-203ENST00000403997 RB1CC1Q8TDY2 1594 aa27.59■■■□□ 2.01
SDF4-203ENST00000403997 NACADO15069 1562 aa27.48■■□□□ 1.99
SDF4-203ENST00000403997 MYO15BQ96JP2 1530 aa27.18■■□□□ 1.94
SDF4-203ENST00000403997 ZCCHC6Q5VYS8 1495 aaKnown RBP27.11■■□□□ 1.93
SDF4-203ENST00000403997 PABPN1Q86U42 306 aaKnown RBP eCLIP27.03■■□□□ 1.92
SDF4-203ENST00000403997 DCAF1Q9Y4B6 1507 aa26.95■■□□□ 1.91
SDF4-203ENST00000403997 DNAJC5BQ9UF47 199 aa26.95■■□□□ 1.9
SDF4-203ENST00000403997 UNC13AQ9UPW8 1703 aa26.9■■□□□ 1.9
SDF4-203ENST00000403997 BICRAQ9NZM4 1560 aa26.75■■□□□ 1.87
SDF4-203ENST00000403997 SCRIBQ14160 1630 aa26.59■■□□□ 1.85
SDF4-203ENST00000403997 SHROOM4Q9ULL8 1493 aa26.41■■□□□ 1.82
SDF4-203ENST00000403997 EIF4G1Q04637 1599 aaKnown RBP26.08■■□□□ 1.77
SDF4-203ENST00000403997 CC2D2AQ9P2K1 1620 aa26.07■■□□□ 1.76
SDF4-203ENST00000403997 CECR2Q9BXF3 1484 aa25.98■■□□□ 1.75
SDF4-203ENST00000403997 DNAJC5Q9H3Z4 198 aa25.64■■□□□ 1.7
SDF4-203ENST00000403997 NCAPD3P42695 1498 aa25.4■■□□□ 1.66
SDF4-203ENST00000403997 SMARCA4P51532 1647 aa25.37■■□□□ 1.65
SDF4-203ENST00000403997 ATAD2BQ9ULI0 1458 aa25.36■■□□□ 1.65
SDF4-203ENST00000403997 BAZ1AQ9NRL2 1556 aaPredicted RBP25.31■■□□□ 1.64
SDF4-203ENST00000403997 SMARCA2P51531 1590 aa25.29■■□□□ 1.64
SDF4-203ENST00000403997 HMGXB3Q12766 1538 aa25.18■■□□□ 1.62
SDF4-203ENST00000403997 MROH2BQ7Z745 1585 aa25.18■■□□□ 1.62
SDF4-203ENST00000403997 BAZ1BQ9UIG0 1483 aaKnown RBP25.14■■□□□ 1.61
SDF4-203ENST00000403997 PEG3Q9GZU2 1588 aa25.1■■□□□ 1.61
SDF4-203ENST00000403997 ERCC6Q03468 1493 aa24.94■■□□□ 1.58
SDF4-203ENST00000403997 NESP48681 1621 aa24.9■■□□□ 1.58
SDF4-203ENST00000403997 WIZO95785 1651 aa24.88■■□□□ 1.57
SDF4-203ENST00000403997 RSF1Q96T23 1441 aaPredicted RBP24.79■■□□□ 1.56
SDF4-203ENST00000403997 LAMC3Q9Y6N6 1575 aa24.73■■□□□ 1.55
SDF4-203ENST00000403997 CUX2O14529 1486 aa24.73■■□□□ 1.55
SDF4-203ENST00000403997 CADPSQ9ULU8 1353 aa24.67■■□□□ 1.54
SDF4-203ENST00000403997 PDS5BQ9NTI5 1447 aa24.65■■□□□ 1.54
SDF4-203ENST00000403997 TOP2AP11388 1531 aaKnown RBP24.57■■□□□ 1.52
SDF4-203ENST00000403997 KIF21AQ7Z4S6 1674 aa24.51■■□□□ 1.51
SDF4-203ENST00000403997 THOC2Q8NI27 1593 aaKnown RBP24.5■■□□□ 1.51
SDF4-203ENST00000403997 CFTRP13569 1480 aa24.42■■□□□ 1.5
SDF4-203ENST00000403997 MRC2Q9UBG0 1479 aa24.38■■□□□ 1.49
SDF4-203ENST00000403997 FANCD2Q9BXW9 1451 aa24.37■■□□□ 1.49
SDF4-203ENST00000403997 CEP164Q9UPV0 1460 aa24.36■■□□□ 1.49
SDF4-203ENST00000403997 CCDC88BA6NC98 1476 aa24.34■■□□□ 1.49
SDF4-203ENST00000403997 WDR62O43379 1518 aa24.27■■□□□ 1.48
SDF4-203ENST00000403997 TRIM41Q8WV44 630 aa24.15■■□□□ 1.46
SDF4-203ENST00000403997 URB2Q14146 1524 aaKnown RBP24.13■■□□□ 1.45
SDF4-203ENST00000403997 PRDM2Q13029 1718 aa24.1■■□□□ 1.45
SDF4-203ENST00000403997 SUPT5HO00267 1087 aaKnown RBP24.07■■□□□ 1.44
SDF4-203ENST00000403997 TOPBP1Q92547 1522 aa23.93■■□□□ 1.42
SDF4-203ENST00000403997 ABCC8Q09428 1581 aa23.91■■□□□ 1.42
SDF4-203ENST00000403997 IFT140Q96RY7 1462 aa23.86■■□□□ 1.41
SDF4-203ENST00000403997 DNMBPQ6XZF7 1577 aa23.84■■□□□ 1.41
SDF4-203ENST00000403997 ZNF608Q9ULD9 1512 aaPredicted RBP23.79■■□□□ 1.4
SDF4-203ENST00000403997 OSCARQ8IYS5 282 aa23.77■■□□□ 1.4
SDF4-203ENST00000403997 POLA1P09884 1462 aaPredicted RBP23.7■■□□□ 1.38
SDF4-203ENST00000403997 SOGA1O94964 1423 aa23.67■■□□□ 1.38
SDF4-203ENST00000403997 AQRO60306 1485 aaKnown RBP eCLIP23.65■■□□□ 1.382e-9■■■■□ 19.9
SDF4-203ENST00000403997 TARBP1Q13395 1621 aaKnown RBP23.65■■□□□ 1.38
SDF4-203ENST00000403997 RAD54L2Q9Y4B4 1467 aa23.64■■□□□ 1.38
SDF4-203ENST00000403997 CUX1P39880 1505 aa23.63■■□□□ 1.37
SDF4-203ENST00000403997 EIF4G3O43432 1585 aaKnown RBP23.61■■□□□ 1.37
SDF4-203ENST00000403997 FGD5Q6ZNL6 1462 aa23.61■■□□□ 1.37
SDF4-203ENST00000403997 TDRD9Q8NDG6 1382 aaKnown RBP23.58■■□□□ 1.37
SDF4-203ENST00000403997 FBLN2P98095 1184 aa23.52■■□□□ 1.36
SDF4-203ENST00000403997 WDR97A6NE52 1622 aa23.41■■□□□ 1.34
SDF4-203ENST00000403997 WRNQ14191 1432 aaPredicted RBP eCLIP23.4■■□□□ 1.343e-6■■■■□ 26.3
SDF4-203ENST00000403997 SNAPC4Q5SXM2 1469 aa23.39■■□□□ 1.34
SDF4-203ENST00000403997 GRIN2BQ13224 1484 aa23.38■■□□□ 1.33
SDF4-203ENST00000403997 CHMP7Q8WUX9 453 aaPredicted RBP23.38■■□□□ 1.33
SDF4-203ENST00000403997 CHD1O14646 1710 aa23.38■■□□□ 1.33
SDF4-203ENST00000403997 GAPVD1Q14C86 1478 aa23.36■■□□□ 1.33
SDF4-203ENST00000403997 ABCA10Q8WWZ4 1543 aa23.35■■□□□ 1.33
SDF4-203ENST00000403997 MAGI1Q96QZ7 1491 aaPredicted RBP23.33■■□□□ 1.33
SDF4-203ENST00000403997 TOP2BQ02880 1626 aa23.32■■□□□ 1.32
SDF4-203ENST00000403997 SYNJ1O43426 1573 aa23.3■■□□□ 1.32
SDF4-203ENST00000403997 RIMBP3CA6NJZ7 1639 aa23.3■■□□□ 1.32
SDF4-203ENST00000403997 RIMBP3BA6NNM3 1639 aa23.3■■□□□ 1.32
SDF4-203ENST00000403997 RIMBP3Q9UFD9 1639 aa23.3■■□□□ 1.32
SDF4-203ENST00000403997 BIVM-ERCC5R4GMW8 1640 aa23.29■■□□□ 1.32
SDF4-203ENST00000403997 ARHGEF11O15085 1522 aa23.28■■□□□ 1.32
SDF4-203ENST00000403997 SYNJ2O15056 1496 aa23.25■■□□□ 1.31
SDF4-203ENST00000403997 ABCA5Q8WWZ7 1642 aa23.23■■□□□ 1.31
SDF4-203ENST00000403997 PBRM1Q86U86 1689 aa23.23■■□□□ 1.31
SDF4-203ENST00000403997 CYB5RLQ6IPT4 315 aa23.21■■□□□ 1.31
SDF4-203ENST00000403997 CLASP1Q7Z460 1538 aa23.13■■□□□ 1.29
SDF4-203ENST00000403997 AEBP2Q6ZN18 517 aaPredicted RBP23.09■■□□□ 1.29
SDF4-203ENST00000403997 ARAP1Q96P48 1450 aa23.08■■□□□ 1.29
SDF4-203ENST00000403997 FHAD1B1AJZ9 1412 aa23.07■■□□□ 1.28
SDF4-203ENST00000403997 GRIN2AQ12879 1464 aa23.06■■□□□ 1.28
SDF4-203ENST00000403997 ERICH3Q5RHP9 1530 aa23.06■■□□□ 1.28
SDF4-203ENST00000403997 ADAMTS12P58397 1594 aa23.05■■□□□ 1.28
SDF4-203ENST00000403997 NUP160Q12769 1436 aa22.97■■□□□ 1.27
SDF4-203ENST00000403997 CEP170Q5SW79 1584 aa22.94■■□□□ 1.26
SDF4-203ENST00000403997 KIF27Q86VH2 1401 aa22.94■■□□□ 1.26
SDF4-203ENST00000403997 IGF1RP08069 1367 aa22.91■■□□□ 1.26
SDF4-203ENST00000403997 TRHP20396 242 aaPredicted RBP22.86■■□□□ 1.25
SDF4-203ENST00000403997 JPH4Q96JJ6 628 aa22.84■■□□□ 1.25
SDF4-203ENST00000403997 ERCC6L2Q5T890 1561 aa22.82■■□□□ 1.24
SDF4-203ENST00000403997 SHROOM2Q13796 1616 aa22.78■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms