RNA–Protein interactions for RNA: ENST00000582818.5

ERBB2-213, Transcript of erb-b2 receptor tyrosine kinase 2, humanhuman

TSL 3

Gene ERBB2, Length 529 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERBB2-213ENST00000582818 NISCHQ9Y2I1 1504 aa35.11■■■■□ 3.21
ERBB2-213ENST00000582818 CCDC180Q9P1Z9 1646 aa31.61■■■□□ 2.65
ERBB2-213ENST00000582818 ABCC9O60706 1549 aa31.44■■■□□ 2.62
ERBB2-213ENST00000582818 RB1CC1Q8TDY2 1594 aa30.07■■■□□ 2.4
ERBB2-213ENST00000582818 NACADO15069 1562 aa29.89■■■□□ 2.38
ERBB2-213ENST00000582818 MYO15BQ96JP2 1530 aa29.55■■■□□ 2.32
ERBB2-213ENST00000582818 DNAJC5BQ9UF47 199 aa29.51■■■□□ 2.31
ERBB2-213ENST00000582818 DCAF8L2P0C7V8 631 aa29.46■■■□□ 2.31
ERBB2-213ENST00000582818 UNC13AQ9UPW8 1703 aa29.34■■■□□ 2.29
ERBB2-213ENST00000582818 PABPN1Q86U42 306 aaKnown RBP eCLIP29.22■■■□□ 2.27
ERBB2-213ENST00000582818 BICRAQ9NZM4 1560 aa29.13■■■□□ 2.25
ERBB2-213ENST00000582818 DCAF1Q9Y4B6 1507 aa29.12■■■□□ 2.25
ERBB2-213ENST00000582818 ZCCHC6Q5VYS8 1495 aaKnown RBP29.08■■■□□ 2.25
ERBB2-213ENST00000582818 SHROOM4Q9ULL8 1493 aa28.94■■■□□ 2.22
ERBB2-213ENST00000582818 SCRIBQ14160 1630 aa28.61■■■□□ 2.17
ERBB2-213ENST00000582818 CC2D2AQ9P2K1 1620 aa28.48■■■□□ 2.15
ERBB2-213ENST00000582818 EIF4G1Q04637 1599 aaKnown RBP28.43■■■□□ 2.14
ERBB2-213ENST00000582818 CECR2Q9BXF3 1484 aa28.4■■■□□ 2.14
ERBB2-213ENST00000582818 NCAPD3P42695 1498 aa27.57■■■□□ 2
ERBB2-213ENST00000582818 ATAD2BQ9ULI0 1458 aa27.42■■□□□ 1.98
ERBB2-213ENST00000582818 SMARCA2P51531 1590 aa27.41■■□□□ 1.98
ERBB2-213ENST00000582818 SMARCA4P51532 1647 aa27.38■■□□□ 1.97
ERBB2-213ENST00000582818 HMGXB3Q12766 1538 aa27.37■■□□□ 1.97
ERBB2-213ENST00000582818 CUX2O14529 1486 aa27.29■■□□□ 1.96
ERBB2-213ENST00000582818 BAZ1AQ9NRL2 1556 aaPredicted RBP27.29■■□□□ 1.96
ERBB2-213ENST00000582818 DNAJC5Q9H3Z4 198 aa27.27■■□□□ 1.96
ERBB2-213ENST00000582818 ERCC6Q03468 1493 aa27.21■■□□□ 1.95
ERBB2-213ENST00000582818 PEG3Q9GZU2 1588 aa27.21■■□□□ 1.95
ERBB2-213ENST00000582818 BAZ1BQ9UIG0 1483 aaKnown RBP27.14■■□□□ 1.94
ERBB2-213ENST00000582818 NESP48681 1621 aa26.98■■□□□ 1.91
ERBB2-213ENST00000582818 MROH2BQ7Z745 1585 aa26.97■■□□□ 1.91
ERBB2-213ENST00000582818 LAMC3Q9Y6N6 1575 aa26.97■■□□□ 1.91
ERBB2-213ENST00000582818 THOC2Q8NI27 1593 aaKnown RBP26.81■■□□□ 1.88
ERBB2-213ENST00000582818 PDS5BQ9NTI5 1447 aa26.8■■□□□ 1.88
ERBB2-213ENST00000582818 KIF21AQ7Z4S6 1674 aa26.7■■□□□ 1.87
ERBB2-213ENST00000582818 CADPSQ9ULU8 1353 aa26.7■■□□□ 1.86
ERBB2-213ENST00000582818 WIZO95785 1651 aa26.63■■□□□ 1.85
ERBB2-213ENST00000582818 MRC2Q9UBG0 1479 aa26.52■■□□□ 1.84
ERBB2-213ENST00000582818 WDR62O43379 1518 aa26.48■■□□□ 1.83
ERBB2-213ENST00000582818 RSF1Q96T23 1441 aaPredicted RBP26.43■■□□□ 1.82
ERBB2-213ENST00000582818 CEP164Q9UPV0 1460 aa26.4■■□□□ 1.82
ERBB2-213ENST00000582818 CFTRP13569 1480 aa26.39■■□□□ 1.82
ERBB2-213ENST00000582818 TOP2AP11388 1531 aaKnown RBP26.37■■□□□ 1.81
ERBB2-213ENST00000582818 FANCD2Q9BXW9 1451 aa26.36■■□□□ 1.81
ERBB2-213ENST00000582818 PRDM2Q13029 1718 aa26.18■■□□□ 1.78
ERBB2-213ENST00000582818 URB2Q14146 1524 aaKnown RBP26.11■■□□□ 1.77
ERBB2-213ENST00000582818 CCDC88BA6NC98 1476 aa26.03■■□□□ 1.76
ERBB2-213ENST00000582818 OSCARQ8IYS5 282 aa25.99■■□□□ 1.75
ERBB2-213ENST00000582818 ABCC8Q09428 1581 aa25.93■■□□□ 1.74
ERBB2-213ENST00000582818 IFT140Q96RY7 1462 aa25.91■■□□□ 1.74
ERBB2-213ENST00000582818 TRIM41Q8WV44 630 aa25.88■■□□□ 1.73
ERBB2-213ENST00000582818 TOPBP1Q92547 1522 aa25.85■■□□□ 1.73
ERBB2-213ENST00000582818 DNMBPQ6XZF7 1577 aa25.78■■□□□ 1.72
ERBB2-213ENST00000582818 ZNF608Q9ULD9 1512 aaPredicted RBP25.76■■□□□ 1.71
ERBB2-213ENST00000582818 EIF4G3O43432 1585 aaKnown RBP25.66■■□□□ 1.7
ERBB2-213ENST00000582818 TARBP1Q13395 1621 aaKnown RBP25.64■■□□□ 1.7
ERBB2-213ENST00000582818 RIMBP3CA6NJZ7 1639 aa25.6■■□□□ 1.69
ERBB2-213ENST00000582818 RIMBP3BA6NNM3 1639 aa25.6■■□□□ 1.69
ERBB2-213ENST00000582818 RIMBP3Q9UFD9 1639 aa25.6■■□□□ 1.69
ERBB2-213ENST00000582818 POLA1P09884 1462 aaPredicted RBP25.58■■□□□ 1.69
ERBB2-213ENST00000582818 AQRO60306 1485 aaKnown RBP eCLIP25.53■■□□□ 1.682e-8■■■■■ 31.6
ERBB2-213ENST00000582818 ARHGEF11O15085 1522 aa25.53■■□□□ 1.68
ERBB2-213ENST00000582818 WDR97A6NE52 1622 aa25.52■■□□□ 1.68
ERBB2-213ENST00000582818 CHD1O14646 1710 aa25.49■■□□□ 1.67
ERBB2-213ENST00000582818 SOGA1O94964 1423 aa25.46■■□□□ 1.67
ERBB2-213ENST00000582818 RAD54L2Q9Y4B4 1467 aa25.4■■□□□ 1.66
ERBB2-213ENST00000582818 FGD5Q6ZNL6 1462 aa25.39■■□□□ 1.65
ERBB2-213ENST00000582818 TDRD9Q8NDG6 1382 aaKnown RBP25.36■■□□□ 1.65
ERBB2-213ENST00000582818 CUX1P39880 1505 aa25.36■■□□□ 1.65
ERBB2-213ENST00000582818 FBLN2P98095 1184 aa25.33■■□□□ 1.65
ERBB2-213ENST00000582818 MAGI1Q96QZ7 1491 aaPredicted RBP25.33■■□□□ 1.65
ERBB2-213ENST00000582818 CYB5RLQ6IPT4 315 aa25.29■■□□□ 1.64
ERBB2-213ENST00000582818 GRIN2BQ13224 1484 aa25.28■■□□□ 1.64
ERBB2-213ENST00000582818 SNAPC4Q5SXM2 1469 aa25.28■■□□□ 1.64
ERBB2-213ENST00000582818 ARAP1Q96P48 1450 aa25.25■■□□□ 1.63
ERBB2-213ENST00000582818 SYNJ1O43426 1573 aa25.23■■□□□ 1.63
ERBB2-213ENST00000582818 CLASP1Q7Z460 1538 aa25.23■■□□□ 1.63
ERBB2-213ENST00000582818 CHMP7Q8WUX9 453 aaPredicted RBP25.23■■□□□ 1.63
ERBB2-213ENST00000582818 SYNJ2O15056 1496 aa25.21■■□□□ 1.63
ERBB2-213ENST00000582818 ABCA10Q8WWZ4 1543 aa25.17■■□□□ 1.62
ERBB2-213ENST00000582818 GAPVD1Q14C86 1478 aa25.17■■□□□ 1.62
ERBB2-213ENST00000582818 PBRM1Q86U86 1689 aa25.15■■□□□ 1.62
ERBB2-213ENST00000582818 ABCA5Q8WWZ7 1642 aa25.12■■□□□ 1.61
ERBB2-213ENST00000582818 SUPT5HO00267 1087 aaKnown RBP25.09■■□□□ 1.61
ERBB2-213ENST00000582818 WRNQ14191 1432 aaPredicted RBP eCLIP25.06■■□□□ 1.6
ERBB2-213ENST00000582818 TOP2BQ02880 1626 aa25.01■■□□□ 1.59
ERBB2-213ENST00000582818 BIVM-ERCC5R4GMW8 1640 aa25.01■■□□□ 1.59
ERBB2-213ENST00000582818 TRHP20396 242 aaPredicted RBP25■■□□□ 1.59
ERBB2-213ENST00000582818 GRIN2AQ12879 1464 aa24.94■■□□□ 1.58
ERBB2-213ENST00000582818 ADAMTS12P58397 1594 aa24.91■■□□□ 1.58
ERBB2-213ENST00000582818 FHAD1B1AJZ9 1412 aa24.88■■□□□ 1.57
ERBB2-213ENST00000582818 NUP160Q12769 1436 aa24.88■■□□□ 1.57
ERBB2-213ENST00000582818 ERICH3Q5RHP9 1530 aa24.88■■□□□ 1.57
ERBB2-213ENST00000582818 CEP170Q5SW79 1584 aa24.81■■□□□ 1.56
ERBB2-213ENST00000582818 SHROOM2Q13796 1616 aa24.79■■□□□ 1.56
ERBB2-213ENST00000582818 ERCC6L2Q5T890 1561 aa24.71■■□□□ 1.55
ERBB2-213ENST00000582818 JPH4Q96JJ6 628 aa24.6■■□□□ 1.53
ERBB2-213ENST00000582818 PRG4Q92954 1404 aaPredicted RBP24.6■■□□□ 1.53
ERBB2-213ENST00000582818 RUSC2Q8N2Y8 1516 aa24.56■■□□□ 1.52
ERBB2-213ENST00000582818 KIF27Q86VH2 1401 aa24.52■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms