Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC32.87■■■□□ 2.85
NPHP3Q7Z494 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC32.86■■■□□ 2.85
NPHP3Q7Z494 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC32.86■■■□□ 2.85
NPHP3Q7Z494 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC32.86■■■□□ 2.85
NPHP3Q7Z494 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC32.86■■■□□ 2.85
NPHP3Q7Z494 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC32.85■■■□□ 2.85
NPHP3Q7Z494 BX255925.1-201ENST00000566954 1854 ntBASIC32.85■■■□□ 2.85
NPHP3Q7Z494 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC32.85■■■□□ 2.85
NPHP3Q7Z494 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC32.84■■■□□ 2.85
NPHP3Q7Z494 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC32.84■■■□□ 2.85
NPHP3Q7Z494 CD72-202ENST00000378430 585 ntTSL 3 BASIC32.84■■■□□ 2.85
NPHP3Q7Z494 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC32.84■■■□□ 2.85
NPHP3Q7Z494 AC142381.2-201ENST00000566120 298 ntBASIC32.84■■■□□ 2.85
NPHP3Q7Z494 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC32.83■■■□□ 2.85
NPHP3Q7Z494 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC32.83■■■□□ 2.85
NPHP3Q7Z494 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC32.83■■■□□ 2.85
NPHP3Q7Z494 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC32.82■■■□□ 2.85
NPHP3Q7Z494 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC32.82■■■□□ 2.84
NPHP3Q7Z494 PBX2P1-201ENST00000493219 1291 ntBASIC32.82■■■□□ 2.84
NPHP3Q7Z494 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC32.82■■■□□ 2.84
NPHP3Q7Z494 CLTA-210ENST00000540080 989 ntTSL 2 BASIC32.82■■■□□ 2.84
NPHP3Q7Z494 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC32.82■■■□□ 2.84
NPHP3Q7Z494 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC32.81■■■□□ 2.84
NPHP3Q7Z494 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC32.81■■■□□ 2.84
NPHP3Q7Z494 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
NPHP3Q7Z494 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC32.8■■■□□ 2.84
NPHP3Q7Z494 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
NPHP3Q7Z494 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC32.8■■■□□ 2.84
NPHP3Q7Z494 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
NPHP3Q7Z494 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC32.79■■■□□ 2.84
NPHP3Q7Z494 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
NPHP3Q7Z494 AC135279.3-201ENST00000610945 1311 ntBASIC32.79■■■□□ 2.84
NPHP3Q7Z494 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC32.78■■■□□ 2.84
NPHP3Q7Z494 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC32.78■■■□□ 2.84
NPHP3Q7Z494 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC32.78■■■□□ 2.84
NPHP3Q7Z494 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC32.78■■■□□ 2.84
NPHP3Q7Z494 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC32.78■■■□□ 2.84
NPHP3Q7Z494 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
NPHP3Q7Z494 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC32.77■■■□□ 2.84
NPHP3Q7Z494 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC32.77■■■□□ 2.84
NPHP3Q7Z494 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC32.77■■■□□ 2.84
NPHP3Q7Z494 AC104564.3-201ENST00000582367 638 ntBASIC32.77■■■□□ 2.84
NPHP3Q7Z494 AL031432.3-201ENST00000607698 485 ntBASIC32.77■■■□□ 2.84
NPHP3Q7Z494 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC32.77■■■□□ 2.84
NPHP3Q7Z494 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC32.77■■■□□ 2.84
NPHP3Q7Z494 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC32.77■■■□□ 2.84
NPHP3Q7Z494 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC32.76■■■□□ 2.83
NPHP3Q7Z494 TFPT-201ENST00000391757 774 ntTSL 5 BASIC32.76■■■□□ 2.83
NPHP3Q7Z494 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC32.76■■■□□ 2.83
NPHP3Q7Z494 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC32.75■■■□□ 2.83
NPHP3Q7Z494 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
NPHP3Q7Z494 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
NPHP3Q7Z494 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC32.75■■■□□ 2.83
NPHP3Q7Z494 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC32.75■■■□□ 2.83
NPHP3Q7Z494 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC32.75■■■□□ 2.83
NPHP3Q7Z494 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC32.75■■■□□ 2.83
NPHP3Q7Z494 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
NPHP3Q7Z494 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
NPHP3Q7Z494 SUDS3P1-201ENST00000505831 966 ntBASIC32.74■■■□□ 2.83
NPHP3Q7Z494 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC32.74■■■□□ 2.83
NPHP3Q7Z494 MIR5787-201ENST00000611784 55 ntBASIC32.74■■■□□ 2.83
NPHP3Q7Z494 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
NPHP3Q7Z494 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
NPHP3Q7Z494 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC32.73■■■□□ 2.83
NPHP3Q7Z494 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
NPHP3Q7Z494 LGR4-203ENST00000480977 492 ntTSL 2 BASIC32.73■■■□□ 2.83
NPHP3Q7Z494 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC32.73■■■□□ 2.83
NPHP3Q7Z494 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC32.72■■■□□ 2.83
NPHP3Q7Z494 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC32.72■■■□□ 2.83
NPHP3Q7Z494 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC32.72■■■□□ 2.83
NPHP3Q7Z494 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC32.71■■■□□ 2.83
NPHP3Q7Z494 AF131216.4-201ENST00000638924 1588 ntBASIC32.71■■■□□ 2.83
NPHP3Q7Z494 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC32.71■■■□□ 2.83
NPHP3Q7Z494 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC32.71■■■□□ 2.83
NPHP3Q7Z494 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC32.71■■■□□ 2.83
NPHP3Q7Z494 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC32.7■■■□□ 2.83
NPHP3Q7Z494 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC32.7■■■□□ 2.83
NPHP3Q7Z494 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC32.7■■■□□ 2.83
NPHP3Q7Z494 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC32.7■■■□□ 2.83
NPHP3Q7Z494 ST7-205ENST00000393446 2114 ntTSL 5 BASIC32.7■■■□□ 2.82
NPHP3Q7Z494 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC32.7■■■□□ 2.82
NPHP3Q7Z494 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC32.69■■■□□ 2.82
NPHP3Q7Z494 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC32.69■■■□□ 2.82
NPHP3Q7Z494 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC32.69■■■□□ 2.82
NPHP3Q7Z494 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC32.69■■■□□ 2.82
NPHP3Q7Z494 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC32.68■■■□□ 2.82
NPHP3Q7Z494 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC32.68■■■□□ 2.82
NPHP3Q7Z494 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC32.68■■■□□ 2.82
NPHP3Q7Z494 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC32.68■■■□□ 2.82
NPHP3Q7Z494 AC142472.1-201ENST00000612013 1741 ntBASIC32.67■■■□□ 2.82
NPHP3Q7Z494 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC32.67■■■□□ 2.82
NPHP3Q7Z494 UNC93B3-201ENST00000308076 687 ntBASIC32.67■■■□□ 2.82
NPHP3Q7Z494 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC32.67■■■□□ 2.82
NPHP3Q7Z494 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC32.67■■■□□ 2.82
NPHP3Q7Z494 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
NPHP3Q7Z494 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC32.66■■■□□ 2.82
NPHP3Q7Z494 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC32.66■■■□□ 2.82
NPHP3Q7Z494 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC32.65■■■□□ 2.82
NPHP3Q7Z494 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC32.65■■■□□ 2.82
NPHP3Q7Z494 AL136162.1-201ENST00000607711 1078 ntBASIC32.65■■■□□ 2.82
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms