Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC32.07■■■□□ 2.72
RXRBP28702 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC32.06■■■□□ 2.72
RXRBP28702 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC32.06■■■□□ 2.72
RXRBP28702 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC32.05■■■□□ 2.72
RXRBP28702 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
RXRBP28702 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC32.05■■■□□ 2.72
RXRBP28702 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC32.05■■■□□ 2.72
RXRBP28702 SRD5A1P1-201ENST00000442297 786 ntBASIC32.05■■■□□ 2.72
RXRBP28702 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC32.05■■■□□ 2.72
RXRBP28702 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC32.05■■■□□ 2.72
RXRBP28702 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC32.05■■■□□ 2.72
RXRBP28702 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC32.04■■■□□ 2.72
RXRBP28702 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC32.04■■■□□ 2.72
RXRBP28702 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC32.04■■■□□ 2.72
RXRBP28702 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC32.04■■■□□ 2.72
RXRBP28702 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC32.04■■■□□ 2.72
RXRBP28702 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC32.03■■■□□ 2.72
RXRBP28702 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC32.03■■■□□ 2.72
RXRBP28702 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC32.03■■■□□ 2.72
RXRBP28702 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC32.03■■■□□ 2.72
RXRBP28702 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC32.03■■■□□ 2.72
RXRBP28702 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC32.02■■■□□ 2.72
RXRBP28702 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
RXRBP28702 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC32.02■■■□□ 2.72
RXRBP28702 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC32.01■■■□□ 2.71
RXRBP28702 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC32■■■□□ 2.71
RXRBP28702 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC32■■■□□ 2.71
RXRBP28702 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
RXRBP28702 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC32■■■□□ 2.71
RXRBP28702 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
RXRBP28702 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC31.99■■■□□ 2.71
RXRBP28702 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC31.99■■■□□ 2.71
RXRBP28702 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
RXRBP28702 GAK-223ENST00000628912 497 ntTSL 5 BASIC31.98■■■□□ 2.71
RXRBP28702 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
RXRBP28702 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC31.97■■■□□ 2.71
RXRBP28702 AC004448.1-201ENST00000458332 883 ntBASIC31.97■■■□□ 2.71
RXRBP28702 CA15P2-201ENST00000611168 834 ntBASIC31.97■■■□□ 2.71
RXRBP28702 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
RXRBP28702 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
RXRBP28702 ASB1-202ENST00000409297 878 ntTSL 5 BASIC31.96■■■□□ 2.71
RXRBP28702 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC31.96■■■□□ 2.71
RXRBP28702 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC31.95■■■□□ 2.71
RXRBP28702 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC31.95■■■□□ 2.71
RXRBP28702 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC31.95■■■□□ 2.71
RXRBP28702 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC31.94■■■□□ 2.7
RXRBP28702 IRS3P-201ENST00000223076 1006 ntBASIC31.94■■■□□ 2.7
RXRBP28702 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
RXRBP28702 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC31.94■■■□□ 2.7
RXRBP28702 AP002414.2-202ENST00000590929 1450 ntBASIC31.94■■■□□ 2.7
RXRBP28702 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC31.94■■■□□ 2.7
RXRBP28702 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC31.93■■■□□ 2.7
RXRBP28702 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC31.93■■■□□ 2.7
RXRBP28702 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
RXRBP28702 JTB-203ENST00000368589 1216 ntTSL 2 BASIC31.93■■■□□ 2.7
RXRBP28702 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC31.93■■■□□ 2.7
RXRBP28702 AC092437.1-201ENST00000624794 1048 ntBASIC31.93■■■□□ 2.7
RXRBP28702 RASA4CP-201ENST00000424092 1398 ntBASIC31.93■■■□□ 2.7
RXRBP28702 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC31.92■■■□□ 2.7
RXRBP28702 MAG-206ENST00000597035 542 ntTSL 4 BASIC31.92■■■□□ 2.7
RXRBP28702 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC31.92■■■□□ 2.7
RXRBP28702 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
RXRBP28702 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
RXRBP28702 AC011551.1-201ENST00000614101 683 ntBASIC31.91■■■□□ 2.7
RXRBP28702 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC31.9■■■□□ 2.7
RXRBP28702 SLC47A1P1-202ENST00000449666 945 ntBASIC31.9■■■□□ 2.7
RXRBP28702 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC31.9■■■□□ 2.7
RXRBP28702 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
RXRBP28702 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
RXRBP28702 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC31.89■■■□□ 2.7
RXRBP28702 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
RXRBP28702 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
RXRBP28702 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC31.89■■■□□ 2.69
RXRBP28702 AC034268.1-201ENST00000441047 882 ntBASIC31.88■■■□□ 2.69
RXRBP28702 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC31.88■■■□□ 2.69
RXRBP28702 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
RXRBP28702 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC31.88■■■□□ 2.69
RXRBP28702 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC31.87■■■□□ 2.69
RXRBP28702 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
RXRBP28702 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
RXRBP28702 CLTA-206ENST00000466396 695 ntTSL 2 BASIC31.87■■■□□ 2.69
RXRBP28702 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
RXRBP28702 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
RXRBP28702 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC31.87■■■□□ 2.69
RXRBP28702 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
RXRBP28702 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC31.85■■■□□ 2.69
RXRBP28702 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC31.85■■■□□ 2.69
RXRBP28702 DUX4L19-201ENST00000557448 1267 ntBASIC31.85■■■□□ 2.69
RXRBP28702 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC31.85■■■□□ 2.69
RXRBP28702 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
RXRBP28702 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC31.84■■■□□ 2.69
RXRBP28702 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC31.84■■■□□ 2.69
RXRBP28702 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC31.84■■■□□ 2.69
RXRBP28702 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC31.83■■■□□ 2.69
RXRBP28702 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC31.83■■■□□ 2.69
RXRBP28702 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC31.83■■■□□ 2.69
RXRBP28702 SF1-220ENST00000626028 704 ntTSL 2 BASIC31.83■■■□□ 2.69
RXRBP28702 GATM-206ENST00000558336 1522 ntTSL 2 BASIC31.82■■■□□ 2.68
RXRBP28702 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC31.82■■■□□ 2.68
RXRBP28702 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC31.82■■■□□ 2.68
Retrieved 100 of 98,524 protein–RNA pairs in 104.1 ms