Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NKX3-1Q99801 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NKX3-1Q99801 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NKX3-1Q99801 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
NKX3-1Q99801 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC20.69■□□□□ 0.9
NKX3-1Q99801 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
NKX3-1Q99801 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
NKX3-1Q99801 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC20.69■□□□□ 0.9
NKX3-1Q99801 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
NKX3-1Q99801 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
NKX3-1Q99801 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NKX3-1Q99801 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC20.68■□□□□ 0.9
NKX3-1Q99801 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NKX3-1Q99801 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NKX3-1Q99801 CR559946.2-201ENST00000623684 991 ntBASIC20.68■□□□□ 0.9
NKX3-1Q99801 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC20.68■□□□□ 0.9
NKX3-1Q99801 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
NKX3-1Q99801 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
NKX3-1Q99801 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
NKX3-1Q99801 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC20.68■□□□□ 0.9
NKX3-1Q99801 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
NKX3-1Q99801 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NKX3-1Q99801 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
NKX3-1Q99801 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
NKX3-1Q99801 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
NKX3-1Q99801 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
NKX3-1Q99801 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
NKX3-1Q99801 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
NKX3-1Q99801 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
NKX3-1Q99801 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
NKX3-1Q99801 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
NKX3-1Q99801 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
NKX3-1Q99801 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
NKX3-1Q99801 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
NKX3-1Q99801 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
NKX3-1Q99801 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
NKX3-1Q99801 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NKX3-1Q99801 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NKX3-1Q99801 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NKX3-1Q99801 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC20.65■□□□□ 0.9
NKX3-1Q99801 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
NKX3-1Q99801 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NKX3-1Q99801 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC20.65■□□□□ 0.9
NKX3-1Q99801 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
NKX3-1Q99801 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
NKX3-1Q99801 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
NKX3-1Q99801 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC20.64■□□□□ 0.9
NKX3-1Q99801 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC20.64■□□□□ 0.89
NKX3-1Q99801 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
NKX3-1Q99801 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NKX3-1Q99801 MIR639-201ENST00000384974 98 ntBASIC20.64■□□□□ 0.89
NKX3-1Q99801 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC20.64■□□□□ 0.89
NKX3-1Q99801 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC20.64■□□□□ 0.89
NKX3-1Q99801 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC20.64■□□□□ 0.89
NKX3-1Q99801 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NKX3-1Q99801 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
NKX3-1Q99801 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC20.64■□□□□ 0.89
NKX3-1Q99801 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NKX3-1Q99801 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
NKX3-1Q99801 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NKX3-1Q99801 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
NKX3-1Q99801 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
NKX3-1Q99801 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
NKX3-1Q99801 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC20.63■□□□□ 0.89
NKX3-1Q99801 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
NKX3-1Q99801 CASK-201ENST00000378154 2494 ntTSL 5 BASIC20.63■□□□□ 0.89
NKX3-1Q99801 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NKX3-1Q99801 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC20.62■□□□□ 0.89
NKX3-1Q99801 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NKX3-1Q99801 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NKX3-1Q99801 LINC01124-201ENST00000409786 2117 ntBASIC20.62■□□□□ 0.89
NKX3-1Q99801 LTK-203ENST00000453182 2412 ntTSL 2 BASIC20.62■□□□□ 0.89
NKX3-1Q99801 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
NKX3-1Q99801 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
NKX3-1Q99801 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NKX3-1Q99801 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
NKX3-1Q99801 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NKX3-1Q99801 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
NKX3-1Q99801 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NKX3-1Q99801 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NKX3-1Q99801 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC20.61■□□□□ 0.89
NKX3-1Q99801 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
NKX3-1Q99801 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
NKX3-1Q99801 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
NKX3-1Q99801 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
NKX3-1Q99801 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
NKX3-1Q99801 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NKX3-1Q99801 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NKX3-1Q99801 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NKX3-1Q99801 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
NKX3-1Q99801 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NKX3-1Q99801 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NKX3-1Q99801 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC20.59■□□□□ 0.89
NKX3-1Q99801 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NKX3-1Q99801 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC20.59■□□□□ 0.89
NKX3-1Q99801 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
NKX3-1Q99801 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NKX3-1Q99801 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
NKX3-1Q99801 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NKX3-1Q99801 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms