Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC16.92■□□□□ 0.3
CSMD3Q7Z407 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CSMD3Q7Z407 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
CSMD3Q7Z407 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
CSMD3Q7Z407 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC16.92■□□□□ 0.3
CSMD3Q7Z407 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
CSMD3Q7Z407 MIR4281-201ENST00000580852 62 ntBASIC16.92■□□□□ 0.3
CSMD3Q7Z407 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CSMD3Q7Z407 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC16.91■□□□□ 0.3
CSMD3Q7Z407 RASSF1-AS1-201ENST00000629828 790 ntBASIC16.91■□□□□ 0.3
CSMD3Q7Z407 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CSMD3Q7Z407 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CSMD3Q7Z407 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC16.91■□□□□ 0.3
CSMD3Q7Z407 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
CSMD3Q7Z407 TK2-202ENST00000417693 1046 ntTSL 2 BASIC16.91■□□□□ 0.3
CSMD3Q7Z407 AC120024.1-201ENST00000562672 995 ntBASIC16.91■□□□□ 0.3
CSMD3Q7Z407 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
CSMD3Q7Z407 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC16.9■□□□□ 0.3
CSMD3Q7Z407 AC106739.1-201ENST00000617035 715 ntBASIC16.9■□□□□ 0.3
CSMD3Q7Z407 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CSMD3Q7Z407 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC16.9■□□□□ 0.3
CSMD3Q7Z407 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CSMD3Q7Z407 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CSMD3Q7Z407 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CSMD3Q7Z407 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CSMD3Q7Z407 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CSMD3Q7Z407 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CSMD3Q7Z407 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
CSMD3Q7Z407 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CSMD3Q7Z407 BX255925.1-201ENST00000566954 1854 ntBASIC16.89■□□□□ 0.29
CSMD3Q7Z407 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
CSMD3Q7Z407 AC104564.3-201ENST00000582367 638 ntBASIC16.89■□□□□ 0.29
CSMD3Q7Z407 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
CSMD3Q7Z407 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CSMD3Q7Z407 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CSMD3Q7Z407 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC16.88■□□□□ 0.29
CSMD3Q7Z407 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CSMD3Q7Z407 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CSMD3Q7Z407 MIR6724-1-201ENST00000616420 92 ntBASIC16.88■□□□□ 0.29
CSMD3Q7Z407 MIR6724-2-201ENST00000616483 92 ntBASIC16.88■□□□□ 0.29
CSMD3Q7Z407 MIR6724-4-201ENST00000617390 92 ntBASIC16.88■□□□□ 0.29
CSMD3Q7Z407 MIR6724-3-201ENST00000622482 92 ntBASIC16.88■□□□□ 0.29
CSMD3Q7Z407 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
CSMD3Q7Z407 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CSMD3Q7Z407 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC16.88■□□□□ 0.29
CSMD3Q7Z407 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC16.88■□□□□ 0.29
CSMD3Q7Z407 AC139426.1-201ENST00000568218 2529 ntBASIC16.88■□□□□ 0.29
CSMD3Q7Z407 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
CSMD3Q7Z407 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CSMD3Q7Z407 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
CSMD3Q7Z407 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC16.87■□□□□ 0.29
CSMD3Q7Z407 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
CSMD3Q7Z407 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
CSMD3Q7Z407 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
CSMD3Q7Z407 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CSMD3Q7Z407 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC16.87■□□□□ 0.29
CSMD3Q7Z407 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CSMD3Q7Z407 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC16.87■□□□□ 0.29
CSMD3Q7Z407 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC16.86■□□□□ 0.29
CSMD3Q7Z407 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CSMD3Q7Z407 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC16.86■□□□□ 0.29
CSMD3Q7Z407 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC16.85■□□□□ 0.29
CSMD3Q7Z407 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
CSMD3Q7Z407 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
CSMD3Q7Z407 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
CSMD3Q7Z407 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CSMD3Q7Z407 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC16.84■□□□□ 0.29
CSMD3Q7Z407 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC16.84■□□□□ 0.29
CSMD3Q7Z407 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CSMD3Q7Z407 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CSMD3Q7Z407 SNAI3-AS1-204ENST00000567997 2048 ntBASIC16.84■□□□□ 0.29
CSMD3Q7Z407 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CSMD3Q7Z407 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC16.84■□□□□ 0.29
CSMD3Q7Z407 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC16.84■□□□□ 0.29
CSMD3Q7Z407 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
CSMD3Q7Z407 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
CSMD3Q7Z407 LGR4-203ENST00000480977 492 ntTSL 2 BASIC16.83■□□□□ 0.29
CSMD3Q7Z407 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CSMD3Q7Z407 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC16.83■□□□□ 0.28
CSMD3Q7Z407 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
CSMD3Q7Z407 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CSMD3Q7Z407 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CSMD3Q7Z407 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC16.82■□□□□ 0.28
CSMD3Q7Z407 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CSMD3Q7Z407 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC16.82■□□□□ 0.28
CSMD3Q7Z407 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC16.82■□□□□ 0.28
CSMD3Q7Z407 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CSMD3Q7Z407 MIR5787-201ENST00000611784 55 ntBASIC16.82■□□□□ 0.28
CSMD3Q7Z407 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC16.82■□□□□ 0.28
CSMD3Q7Z407 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC16.82■□□□□ 0.28
CSMD3Q7Z407 AC010997.5-201ENST00000609182 354 ntBASIC16.82■□□□□ 0.28
CSMD3Q7Z407 AC011551.1-201ENST00000614101 683 ntBASIC16.82■□□□□ 0.28
CSMD3Q7Z407 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC16.82■□□□□ 0.28
CSMD3Q7Z407 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
CSMD3Q7Z407 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CSMD3Q7Z407 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
CSMD3Q7Z407 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
CSMD3Q7Z407 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CSMD3Q7Z407 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC16.81■□□□□ 0.28
CSMD3Q7Z407 MIR6821-201ENST00000617625 74 ntBASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 58.7 ms