Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC21.85■■□□□ 1.09
RFC3P40938 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
RFC3P40938 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC21.85■■□□□ 1.09
RFC3P40938 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
RFC3P40938 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC21.85■■□□□ 1.09
RFC3P40938 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
RFC3P40938 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC21.85■■□□□ 1.09
RFC3P40938 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC21.85■■□□□ 1.09
RFC3P40938 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
RFC3P40938 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC21.84■■□□□ 1.09
RFC3P40938 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
RFC3P40938 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC21.84■■□□□ 1.09
RFC3P40938 AC019171.1-201ENST00000601251 1056 ntBASIC21.84■■□□□ 1.09
RFC3P40938 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
RFC3P40938 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
RFC3P40938 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
RFC3P40938 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC21.83■■□□□ 1.09
RFC3P40938 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
RFC3P40938 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC21.83■■□□□ 1.08
RFC3P40938 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC21.82■■□□□ 1.08
RFC3P40938 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC21.82■■□□□ 1.08
RFC3P40938 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
RFC3P40938 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
RFC3P40938 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
RFC3P40938 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
RFC3P40938 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
RFC3P40938 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC21.81■■□□□ 1.08
RFC3P40938 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
RFC3P40938 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
RFC3P40938 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC21.81■■□□□ 1.08
RFC3P40938 PRTG-204ENST00000561292 833 ntTSL 3 BASIC21.81■■□□□ 1.08
RFC3P40938 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
RFC3P40938 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
RFC3P40938 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC21.8■■□□□ 1.08
RFC3P40938 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC21.8■■□□□ 1.08
RFC3P40938 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
RFC3P40938 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
RFC3P40938 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
RFC3P40938 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
RFC3P40938 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC21.8■■□□□ 1.08
RFC3P40938 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
RFC3P40938 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
RFC3P40938 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
RFC3P40938 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
RFC3P40938 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
RFC3P40938 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC21.79■■□□□ 1.08
RFC3P40938 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC21.79■■□□□ 1.08
RFC3P40938 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
RFC3P40938 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RFC3P40938 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
RFC3P40938 KRT18P10-201ENST00000388836 1287 ntBASIC21.78■■□□□ 1.08
RFC3P40938 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
RFC3P40938 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RFC3P40938 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
RFC3P40938 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
RFC3P40938 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
RFC3P40938 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RFC3P40938 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC21.77■■□□□ 1.08
RFC3P40938 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RFC3P40938 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
RFC3P40938 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RFC3P40938 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.07
RFC3P40938 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
RFC3P40938 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
RFC3P40938 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
RFC3P40938 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
RFC3P40938 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
RFC3P40938 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
RFC3P40938 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RFC3P40938 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC21.75■■□□□ 1.07
RFC3P40938 RNF146-205ENST00000477776 762 ntTSL 3 BASIC21.75■■□□□ 1.07
RFC3P40938 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RFC3P40938 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
RFC3P40938 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
RFC3P40938 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC21.74■■□□□ 1.07
RFC3P40938 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
RFC3P40938 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RFC3P40938 HES6-204ENST00000409182 863 ntTSL 2 BASIC21.74■■□□□ 1.07
RFC3P40938 OR2A1-AS1-204ENST00000470435 602 ntBASIC21.74■■□□□ 1.07
RFC3P40938 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
RFC3P40938 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RFC3P40938 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
RFC3P40938 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
RFC3P40938 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
RFC3P40938 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC21.73■■□□□ 1.07
RFC3P40938 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
RFC3P40938 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RFC3P40938 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
RFC3P40938 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RFC3P40938 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC21.73■■□□□ 1.07
RFC3P40938 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RFC3P40938 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RFC3P40938 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC21.73■■□□□ 1.07
RFC3P40938 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RFC3P40938 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RFC3P40938 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
RFC3P40938 AC239859.2-201ENST00000444165 318 ntBASIC21.72■■□□□ 1.07
RFC3P40938 TK2-216ENST00000564917 1156 ntTSL 3 BASIC21.72■■□□□ 1.07
RFC3P40938 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RFC3P40938 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 86.6 ms