Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
PTCD1O75127 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
PTCD1O75127 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
PTCD1O75127 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC31.06■■■□□ 2.56
PTCD1O75127 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC31.06■■■□□ 2.56
PTCD1O75127 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC31.06■■■□□ 2.56
PTCD1O75127 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC31.05■■■□□ 2.56
PTCD1O75127 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC31.05■■■□□ 2.56
PTCD1O75127 KRT16P3-201ENST00000439127 1283 ntBASIC31.05■■■□□ 2.56
PTCD1O75127 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
PTCD1O75127 AP004609.3-201ENST00000610705 1884 ntBASIC31.04■■■□□ 2.56
PTCD1O75127 TSPY9P-201ENST00000440215 945 ntBASIC31.04■■■□□ 2.56
PTCD1O75127 TSPY11P-201ENST00000442607 1045 ntBASIC31.04■■■□□ 2.56
PTCD1O75127 AC137630.3-201ENST00000607245 391 ntBASIC31.04■■■□□ 2.56
PTCD1O75127 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC31.04■■■□□ 2.56
PTCD1O75127 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC31.04■■■□□ 2.56
PTCD1O75127 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC31.04■■■□□ 2.56
PTCD1O75127 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
PTCD1O75127 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC31.03■■■□□ 2.56
PTCD1O75127 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC31.03■■■□□ 2.56
PTCD1O75127 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC31.03■■■□□ 2.56
PTCD1O75127 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC31.03■■■□□ 2.56
PTCD1O75127 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC31.03■■■□□ 2.56
PTCD1O75127 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC31.02■■■□□ 2.56
PTCD1O75127 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC31.02■■■□□ 2.56
PTCD1O75127 SHF-206ENST00000560471 2499 ntTSL 5 BASIC31.02■■■□□ 2.56
PTCD1O75127 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC31.02■■■□□ 2.56
PTCD1O75127 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
PTCD1O75127 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
PTCD1O75127 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
PTCD1O75127 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC31.02■■■□□ 2.56
PTCD1O75127 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
PTCD1O75127 PEMT-206ENST00000435340 960 ntTSL 5 BASIC31.01■■■□□ 2.55
PTCD1O75127 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
PTCD1O75127 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC31■■■□□ 2.55
PTCD1O75127 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
PTCD1O75127 AC021242.3-201ENST00000607598 1377 ntBASIC31■■■□□ 2.55
PTCD1O75127 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
PTCD1O75127 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
PTCD1O75127 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC30.99■■■□□ 2.55
PTCD1O75127 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC30.99■■■□□ 2.55
PTCD1O75127 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
PTCD1O75127 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC30.98■■■□□ 2.55
PTCD1O75127 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC30.98■■■□□ 2.55
PTCD1O75127 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
PTCD1O75127 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC30.98■■■□□ 2.55
PTCD1O75127 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC30.97■■■□□ 2.55
PTCD1O75127 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
PTCD1O75127 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC30.97■■■□□ 2.55
PTCD1O75127 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC30.97■■■□□ 2.55
PTCD1O75127 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC30.96■■■□□ 2.55
PTCD1O75127 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC30.96■■■□□ 2.55
PTCD1O75127 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC30.96■■■□□ 2.55
PTCD1O75127 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC30.96■■■□□ 2.55
PTCD1O75127 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
PTCD1O75127 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC30.95■■■□□ 2.55
PTCD1O75127 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC30.95■■■□□ 2.55
PTCD1O75127 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC30.95■■■□□ 2.55
PTCD1O75127 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC30.95■■■□□ 2.55
PTCD1O75127 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC30.95■■■□□ 2.55
PTCD1O75127 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC30.95■■■□□ 2.55
PTCD1O75127 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC30.95■■■□□ 2.54
PTCD1O75127 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC30.95■■■□□ 2.54
PTCD1O75127 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC30.94■■■□□ 2.54
PTCD1O75127 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
PTCD1O75127 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC30.94■■■□□ 2.54
PTCD1O75127 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
PTCD1O75127 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC30.93■■■□□ 2.54
PTCD1O75127 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC30.93■■■□□ 2.54
PTCD1O75127 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
PTCD1O75127 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC30.92■■■□□ 2.54
PTCD1O75127 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC30.91■■■□□ 2.54
PTCD1O75127 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
PTCD1O75127 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC30.91■■■□□ 2.54
PTCD1O75127 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC30.91■■■□□ 2.54
PTCD1O75127 AC092028.1-203ENST00000608262 953 ntBASIC30.91■■■□□ 2.54
PTCD1O75127 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
PTCD1O75127 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
PTCD1O75127 MIR4281-201ENST00000580852 62 ntBASIC30.9■■■□□ 2.54
PTCD1O75127 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
PTCD1O75127 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
PTCD1O75127 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC30.89■■■□□ 2.54
PTCD1O75127 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
PTCD1O75127 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
PTCD1O75127 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC30.88■■■□□ 2.53
PTCD1O75127 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
PTCD1O75127 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
PTCD1O75127 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC30.87■■■□□ 2.53
PTCD1O75127 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
PTCD1O75127 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
PTCD1O75127 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
PTCD1O75127 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
PTCD1O75127 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC30.86■■■□□ 2.53
PTCD1O75127 TRIR-202ENST00000588213 841 ntTSL 3 BASIC30.86■■■□□ 2.53
PTCD1O75127 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC30.86■■■□□ 2.53
PTCD1O75127 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC30.85■■■□□ 2.53
PTCD1O75127 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC30.85■■■□□ 2.53
PTCD1O75127 MIR935-201ENST00000401179 91 ntBASIC30.85■■■□□ 2.53
PTCD1O75127 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC30.85■■■□□ 2.53
PTCD1O75127 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC30.85■■■□□ 2.53
Retrieved 100 of 98,524 protein–RNA pairs in 197.7 ms