Protein–RNA interactions for Protein: Q96JI7

SPG11, Spatacsin, humanhuman

Predictions only

Length 2,443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11Q96JI7 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SPG11Q96JI7 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
SPG11Q96JI7 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC20.65■□□□□ 0.9
SPG11Q96JI7 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC20.65■□□□□ 0.9
SPG11Q96JI7 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.65■□□□□ 0.9
SPG11Q96JI7 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
SPG11Q96JI7 AL136116.3-201ENST00000402907 1138 ntBASIC20.65■□□□□ 0.9
SPG11Q96JI7 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
SPG11Q96JI7 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC20.64■□□□□ 0.9
SPG11Q96JI7 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
SPG11Q96JI7 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC20.64■□□□□ 0.89
SPG11Q96JI7 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
SPG11Q96JI7 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC20.64■□□□□ 0.89
SPG11Q96JI7 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SPG11Q96JI7 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SPG11Q96JI7 AC133561.4-201ENST00000566112 224 ntBASIC20.64■□□□□ 0.89
SPG11Q96JI7 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC20.64■□□□□ 0.89
SPG11Q96JI7 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC20.64■□□□□ 0.89
SPG11Q96JI7 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC20.64■□□□□ 0.89
SPG11Q96JI7 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
SPG11Q96JI7 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC20.63■□□□□ 0.89
SPG11Q96JI7 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC20.63■□□□□ 0.89
SPG11Q96JI7 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SPG11Q96JI7 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
SPG11Q96JI7 SUDS3P1-201ENST00000505831 966 ntBASIC20.62■□□□□ 0.89
SPG11Q96JI7 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
SPG11Q96JI7 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SPG11Q96JI7 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SPG11Q96JI7 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SPG11Q96JI7 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SPG11Q96JI7 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SPG11Q96JI7 AC096631.2-201ENST00000436136 790 ntBASIC20.62■□□□□ 0.89
SPG11Q96JI7 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SPG11Q96JI7 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SPG11Q96JI7 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
SPG11Q96JI7 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC20.61■□□□□ 0.89
SPG11Q96JI7 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
SPG11Q96JI7 AC120024.1-201ENST00000562672 995 ntBASIC20.61■□□□□ 0.89
SPG11Q96JI7 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SPG11Q96JI7 QDPR-206ENST00000508623 601 ntTSL 3 BASIC20.6■□□□□ 0.89
SPG11Q96JI7 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC20.6■□□□□ 0.89
SPG11Q96JI7 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SPG11Q96JI7 EBPL-204ENST00000378272 766 ntTSL 3 BASIC20.59■□□□□ 0.89
SPG11Q96JI7 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC20.59■□□□□ 0.89
SPG11Q96JI7 MIR4281-201ENST00000580852 62 ntBASIC20.59■□□□□ 0.89
SPG11Q96JI7 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC20.59■□□□□ 0.89
SPG11Q96JI7 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC20.59■□□□□ 0.89
SPG11Q96JI7 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SPG11Q96JI7 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
SPG11Q96JI7 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
SPG11Q96JI7 RPP21-222ENST00000433076 577 ntTSL 2 BASIC20.59■□□□□ 0.89
SPG11Q96JI7 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SPG11Q96JI7 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
SPG11Q96JI7 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC20.58■□□□□ 0.89
SPG11Q96JI7 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
SPG11Q96JI7 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SPG11Q96JI7 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC20.58■□□□□ 0.89
SPG11Q96JI7 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.88
SPG11Q96JI7 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
SPG11Q96JI7 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
SPG11Q96JI7 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC20.58■□□□□ 0.88
SPG11Q96JI7 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SPG11Q96JI7 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
SPG11Q96JI7 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SPG11Q96JI7 AL356740.2-201ENST00000601559 647 ntBASIC20.57■□□□□ 0.88
SPG11Q96JI7 AC139426.1-201ENST00000568218 2529 ntBASIC20.57■□□□□ 0.88
SPG11Q96JI7 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SPG11Q96JI7 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC20.57■□□□□ 0.88
SPG11Q96JI7 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SPG11Q96JI7 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
SPG11Q96JI7 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SPG11Q96JI7 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SPG11Q96JI7 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SPG11Q96JI7 LSM4-201ENST00000252816 986 ntTSL 2 BASIC20.56■□□□□ 0.88
SPG11Q96JI7 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SPG11Q96JI7 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
SPG11Q96JI7 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SPG11Q96JI7 KRT18P10-201ENST00000388836 1287 ntBASIC20.55■□□□□ 0.88
SPG11Q96JI7 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC20.55■□□□□ 0.88
SPG11Q96JI7 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SPG11Q96JI7 AL117332.1-201ENST00000622628 974 ntBASIC20.55■□□□□ 0.88
SPG11Q96JI7 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SPG11Q96JI7 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SPG11Q96JI7 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC20.55■□□□□ 0.88
SPG11Q96JI7 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SPG11Q96JI7 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SPG11Q96JI7 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC20.54■□□□□ 0.88
SPG11Q96JI7 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SPG11Q96JI7 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
SPG11Q96JI7 RARRES2P6-201ENST00000567333 442 ntBASIC20.54■□□□□ 0.88
SPG11Q96JI7 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SPG11Q96JI7 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SPG11Q96JI7 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SPG11Q96JI7 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC20.53■□□□□ 0.88
SPG11Q96JI7 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
SPG11Q96JI7 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC20.53■□□□□ 0.88
SPG11Q96JI7 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC20.52■□□□□ 0.88
SPG11Q96JI7 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SPG11Q96JI7 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
SPG11Q96JI7 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 220.1 ms