Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 OR2A1-AS1-204ENST00000470435 602 ntBASIC23.63■■□□□ 1.37
LMX1AQ8TE12 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC23.63■■□□□ 1.37
LMX1AQ8TE12 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
LMX1AQ8TE12 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC23.63■■□□□ 1.37
LMX1AQ8TE12 AC142086.6-201ENST00000621154 1765 ntBASIC23.63■■□□□ 1.37
LMX1AQ8TE12 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC23.62■■□□□ 1.37
LMX1AQ8TE12 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
LMX1AQ8TE12 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
LMX1AQ8TE12 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC23.61■■□□□ 1.37
LMX1AQ8TE12 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC23.61■■□□□ 1.37
LMX1AQ8TE12 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
LMX1AQ8TE12 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC23.61■■□□□ 1.37
LMX1AQ8TE12 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC23.61■■□□□ 1.37
LMX1AQ8TE12 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC23.6■■□□□ 1.37
LMX1AQ8TE12 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
LMX1AQ8TE12 GUSBP5-201ENST00000418136 578 ntBASIC23.6■■□□□ 1.37
LMX1AQ8TE12 RNF146-205ENST00000477776 762 ntTSL 3 BASIC23.6■■□□□ 1.37
LMX1AQ8TE12 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC23.59■■□□□ 1.37
LMX1AQ8TE12 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC23.59■■□□□ 1.37
LMX1AQ8TE12 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC23.59■■□□□ 1.37
LMX1AQ8TE12 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
LMX1AQ8TE12 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC23.58■■□□□ 1.37
LMX1AQ8TE12 TK2-216ENST00000564917 1156 ntTSL 3 BASIC23.58■■□□□ 1.37
LMX1AQ8TE12 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.37
LMX1AQ8TE12 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC23.58■■□□□ 1.36
LMX1AQ8TE12 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC23.57■■□□□ 1.36
LMX1AQ8TE12 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC23.57■■□□□ 1.36
LMX1AQ8TE12 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
LMX1AQ8TE12 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC23.57■■□□□ 1.36
LMX1AQ8TE12 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
LMX1AQ8TE12 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
LMX1AQ8TE12 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC23.56■■□□□ 1.36
LMX1AQ8TE12 AC239859.2-201ENST00000444165 318 ntBASIC23.56■■□□□ 1.36
LMX1AQ8TE12 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC23.56■■□□□ 1.36
LMX1AQ8TE12 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC23.56■■□□□ 1.36
LMX1AQ8TE12 SHF-206ENST00000560471 2499 ntTSL 5 BASIC23.56■■□□□ 1.36
LMX1AQ8TE12 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC23.56■■□□□ 1.36
LMX1AQ8TE12 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC23.55■■□□□ 1.36
LMX1AQ8TE12 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC23.55■■□□□ 1.36
LMX1AQ8TE12 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
LMX1AQ8TE12 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
LMX1AQ8TE12 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
LMX1AQ8TE12 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC23.54■■□□□ 1.36
LMX1AQ8TE12 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC23.54■■□□□ 1.36
LMX1AQ8TE12 AC131212.1-201ENST00000613771 668 ntBASIC23.54■■□□□ 1.36
LMX1AQ8TE12 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
LMX1AQ8TE12 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
LMX1AQ8TE12 SHF-208ENST00000560734 1731 ntTSL 3 BASIC23.53■■□□□ 1.36
LMX1AQ8TE12 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
LMX1AQ8TE12 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC23.53■■□□□ 1.36
LMX1AQ8TE12 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC23.53■■□□□ 1.36
LMX1AQ8TE12 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
LMX1AQ8TE12 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
LMX1AQ8TE12 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC23.52■■□□□ 1.36
LMX1AQ8TE12 AC022616.5-201ENST00000518796 181 ntBASIC23.52■■□□□ 1.36
LMX1AQ8TE12 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC23.52■■□□□ 1.36
LMX1AQ8TE12 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
LMX1AQ8TE12 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
LMX1AQ8TE12 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
LMX1AQ8TE12 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC23.51■■□□□ 1.35
LMX1AQ8TE12 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
LMX1AQ8TE12 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC23.51■■□□□ 1.35
LMX1AQ8TE12 THA1P-201ENST00000590384 1145 ntBASIC23.51■■□□□ 1.35
LMX1AQ8TE12 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
LMX1AQ8TE12 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
LMX1AQ8TE12 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC23.5■■□□□ 1.35
LMX1AQ8TE12 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
LMX1AQ8TE12 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
LMX1AQ8TE12 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC23.5■■□□□ 1.35
LMX1AQ8TE12 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
LMX1AQ8TE12 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC23.49■■□□□ 1.35
LMX1AQ8TE12 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC23.49■■□□□ 1.35
LMX1AQ8TE12 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC23.49■■□□□ 1.35
LMX1AQ8TE12 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
LMX1AQ8TE12 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
LMX1AQ8TE12 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
LMX1AQ8TE12 Z92544.1-202ENST00000571933 1220 ntBASIC23.48■■□□□ 1.35
LMX1AQ8TE12 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC23.48■■□□□ 1.35
LMX1AQ8TE12 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
LMX1AQ8TE12 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
LMX1AQ8TE12 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC23.47■■□□□ 1.35
LMX1AQ8TE12 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC23.47■■□□□ 1.35
LMX1AQ8TE12 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
LMX1AQ8TE12 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC23.47■■□□□ 1.35
LMX1AQ8TE12 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
LMX1AQ8TE12 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
LMX1AQ8TE12 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC23.46■■□□□ 1.35
LMX1AQ8TE12 AL356441.2-201ENST00000443009 864 ntBASIC23.46■■□□□ 1.35
LMX1AQ8TE12 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.35
LMX1AQ8TE12 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.35
LMX1AQ8TE12 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC23.45■■□□□ 1.34
LMX1AQ8TE12 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC23.45■■□□□ 1.34
LMX1AQ8TE12 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
LMX1AQ8TE12 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC23.45■■□□□ 1.34
LMX1AQ8TE12 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC23.45■■□□□ 1.34
LMX1AQ8TE12 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
LMX1AQ8TE12 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC23.45■■□□□ 1.34
LMX1AQ8TE12 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
LMX1AQ8TE12 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
LMX1AQ8TE12 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC23.44■■□□□ 1.34
Retrieved 100 of 98,524 protein–RNA pairs in 86.1 ms