Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
RFC4P35249 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC30.72■■■□□ 2.51
RFC4P35249 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
RFC4P35249 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC30.72■■■□□ 2.51
RFC4P35249 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
RFC4P35249 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
RFC4P35249 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC30.71■■■□□ 2.51
RFC4P35249 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
RFC4P35249 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC30.71■■■□□ 2.51
RFC4P35249 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC30.71■■■□□ 2.51
RFC4P35249 NALT1-201ENST00000429224 738 ntTSL 5 BASIC30.71■■■□□ 2.51
RFC4P35249 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC30.71■■■□□ 2.51
RFC4P35249 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC30.71■■■□□ 2.51
RFC4P35249 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC30.71■■■□□ 2.51
RFC4P35249 RALB-208ENST00000631312 311 ntTSL 5 BASIC30.71■■■□□ 2.51
RFC4P35249 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC30.7■■■□□ 2.51
RFC4P35249 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC30.7■■■□□ 2.51
RFC4P35249 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC30.7■■■□□ 2.5
RFC4P35249 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC30.69■■■□□ 2.5
RFC4P35249 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC30.69■■■□□ 2.5
RFC4P35249 AC092028.1-203ENST00000608262 953 ntBASIC30.69■■■□□ 2.5
RFC4P35249 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC30.68■■■□□ 2.5
RFC4P35249 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
RFC4P35249 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
RFC4P35249 AC131281.2-201ENST00000520478 145 ntBASIC30.68■■■□□ 2.5
RFC4P35249 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
RFC4P35249 AL449106.1-201ENST00000608517 1980 ntBASIC30.68■■■□□ 2.5
RFC4P35249 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC30.68■■■□□ 2.5
RFC4P35249 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
RFC4P35249 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC30.67■■■□□ 2.5
RFC4P35249 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
RFC4P35249 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
RFC4P35249 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
RFC4P35249 SRR-208ENST00000576848 588 ntTSL 4 BASIC30.67■■■□□ 2.5
RFC4P35249 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC30.66■■■□□ 2.5
RFC4P35249 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC30.66■■■□□ 2.5
RFC4P35249 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
RFC4P35249 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
RFC4P35249 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC30.66■■■□□ 2.5
RFC4P35249 RPP21-222ENST00000433076 577 ntTSL 2 BASIC30.66■■■□□ 2.5
RFC4P35249 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC30.66■■■□□ 2.5
RFC4P35249 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
RFC4P35249 ABCB10P1-201ENST00000614297 2181 ntBASIC30.65■■■□□ 2.5
RFC4P35249 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
RFC4P35249 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC30.65■■■□□ 2.5
RFC4P35249 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
RFC4P35249 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
RFC4P35249 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC30.64■■■□□ 2.49
RFC4P35249 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
RFC4P35249 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC30.63■■■□□ 2.49
RFC4P35249 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC30.63■■■□□ 2.49
RFC4P35249 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
RFC4P35249 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC30.62■■■□□ 2.49
RFC4P35249 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC30.62■■■□□ 2.49
RFC4P35249 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC30.62■■■□□ 2.49
RFC4P35249 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC30.62■■■□□ 2.49
RFC4P35249 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC30.62■■■□□ 2.49
RFC4P35249 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
RFC4P35249 AL136116.3-201ENST00000402907 1138 ntBASIC30.61■■■□□ 2.49
RFC4P35249 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC30.61■■■□□ 2.49
RFC4P35249 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC30.61■■■□□ 2.49
RFC4P35249 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
RFC4P35249 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC30.6■■■□□ 2.49
RFC4P35249 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
RFC4P35249 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
RFC4P35249 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC30.59■■■□□ 2.49
RFC4P35249 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC30.59■■■□□ 2.49
RFC4P35249 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC30.59■■■□□ 2.49
RFC4P35249 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC30.59■■■□□ 2.49
RFC4P35249 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC30.59■■■□□ 2.49
RFC4P35249 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC30.59■■■□□ 2.49
RFC4P35249 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC30.58■■■□□ 2.49
RFC4P35249 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC30.58■■■□□ 2.49
RFC4P35249 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC30.58■■■□□ 2.49
RFC4P35249 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC30.58■■■□□ 2.49
RFC4P35249 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC30.58■■■□□ 2.49
RFC4P35249 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
RFC4P35249 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC30.57■■■□□ 2.48
RFC4P35249 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC30.57■■■□□ 2.48
RFC4P35249 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC30.57■■■□□ 2.48
RFC4P35249 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC30.56■■■□□ 2.48
RFC4P35249 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC30.56■■■□□ 2.48
RFC4P35249 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC30.55■■■□□ 2.48
RFC4P35249 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC30.55■■■□□ 2.48
RFC4P35249 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
RFC4P35249 MIR4281-201ENST00000580852 62 ntBASIC30.55■■■□□ 2.48
RFC4P35249 AL117332.1-201ENST00000622628 974 ntBASIC30.55■■■□□ 2.48
RFC4P35249 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC30.55■■■□□ 2.48
RFC4P35249 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC30.54■■■□□ 2.48
RFC4P35249 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC30.54■■■□□ 2.48
RFC4P35249 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC30.54■■■□□ 2.48
RFC4P35249 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC30.54■■■□□ 2.48
RFC4P35249 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC30.54■■■□□ 2.48
RFC4P35249 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC30.54■■■□□ 2.48
RFC4P35249 AC010997.5-201ENST00000609182 354 ntBASIC30.54■■■□□ 2.48
RFC4P35249 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC30.54■■■□□ 2.48
RFC4P35249 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC30.54■■■□□ 2.48
RFC4P35249 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC30.54■■■□□ 2.48
RFC4P35249 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC30.54■■■□□ 2.48
RFC4P35249 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC30.53■■■□□ 2.48
Retrieved 100 of 98,524 protein–RNA pairs in 64.5 ms