Protein–RNA interactions for Protein: O95628

CNOT4, CCR4-NOT transcription complex subunit 4, humanhuman

Known RBP Predictions only

Length 575 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4O95628 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC21.26■□□□□ 0.99
CNOT4O95628 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC21.26■□□□□ 0.99
CNOT4O95628 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CNOT4O95628 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC21.25■□□□□ 0.99
CNOT4O95628 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
CNOT4O95628 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
CNOT4O95628 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
CNOT4O95628 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC21.25■□□□□ 0.99
CNOT4O95628 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC21.25■□□□□ 0.99
CNOT4O95628 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
CNOT4O95628 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC21.24■□□□□ 0.99
CNOT4O95628 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CNOT4O95628 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CNOT4O95628 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC21.24■□□□□ 0.99
CNOT4O95628 DUX4L18-201ENST00000553347 1267 ntBASIC21.24■□□□□ 0.99
CNOT4O95628 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CNOT4O95628 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CNOT4O95628 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CNOT4O95628 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC21.24■□□□□ 0.99
CNOT4O95628 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CNOT4O95628 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CNOT4O95628 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
CNOT4O95628 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CNOT4O95628 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
CNOT4O95628 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CNOT4O95628 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
CNOT4O95628 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC21.23■□□□□ 0.99
CNOT4O95628 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
CNOT4O95628 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CNOT4O95628 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CNOT4O95628 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
CNOT4O95628 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CNOT4O95628 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
CNOT4O95628 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CNOT4O95628 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC21.22■□□□□ 0.99
CNOT4O95628 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC21.22■□□□□ 0.99
CNOT4O95628 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
CNOT4O95628 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC21.22■□□□□ 0.99
CNOT4O95628 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CNOT4O95628 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CNOT4O95628 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CNOT4O95628 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CNOT4O95628 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
CNOT4O95628 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CNOT4O95628 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CNOT4O95628 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC21.21■□□□□ 0.99
CNOT4O95628 AC087393.1-201ENST00000582896 145 ntBASIC21.21■□□□□ 0.99
CNOT4O95628 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CNOT4O95628 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC21.21■□□□□ 0.99
CNOT4O95628 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CNOT4O95628 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
CNOT4O95628 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC21.2■□□□□ 0.98
CNOT4O95628 AC139795.1-202ENST00000500444 432 ntBASIC21.2■□□□□ 0.98
CNOT4O95628 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC21.2■□□□□ 0.98
CNOT4O95628 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CNOT4O95628 AL121749.1-202ENST00000609313 2153 ntBASIC21.2■□□□□ 0.98
CNOT4O95628 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
CNOT4O95628 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC21.19■□□□□ 0.98
CNOT4O95628 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CNOT4O95628 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CNOT4O95628 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CNOT4O95628 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
CNOT4O95628 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CNOT4O95628 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CNOT4O95628 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC21.18■□□□□ 0.98
CNOT4O95628 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CNOT4O95628 RPS2P7-201ENST00000447334 885 ntBASIC21.18■□□□□ 0.98
CNOT4O95628 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC21.18■□□□□ 0.98
CNOT4O95628 AC019171.1-201ENST00000601251 1056 ntBASIC21.18■□□□□ 0.98
CNOT4O95628 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CNOT4O95628 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC21.18■□□□□ 0.98
CNOT4O95628 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CNOT4O95628 MTX2-204ENST00000443241 799 ntTSL 3 BASIC21.17■□□□□ 0.98
CNOT4O95628 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC21.17■□□□□ 0.98
CNOT4O95628 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CNOT4O95628 BHLHE23-202ENST00000612929 1109 ntBASIC21.17■□□□□ 0.98
CNOT4O95628 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
CNOT4O95628 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CNOT4O95628 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CNOT4O95628 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC21.16■□□□□ 0.98
CNOT4O95628 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CNOT4O95628 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC21.15■□□□□ 0.98
CNOT4O95628 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CNOT4O95628 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC21.15■□□□□ 0.98
CNOT4O95628 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CNOT4O95628 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC21.14■□□□□ 0.98
CNOT4O95628 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CNOT4O95628 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC21.14■□□□□ 0.98
CNOT4O95628 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CNOT4O95628 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC21.14■□□□□ 0.97
CNOT4O95628 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
CNOT4O95628 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CNOT4O95628 AL035685.1-201ENST00000636663 812 ntBASIC21.14■□□□□ 0.97
CNOT4O95628 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CNOT4O95628 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC21.14■□□□□ 0.97
CNOT4O95628 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CNOT4O95628 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC21.14■□□□□ 0.97
CNOT4O95628 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CNOT4O95628 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CNOT4O95628 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms