Protein–RNA interactions for Protein: Q9Y221

NIP7, 60S ribosome subunit biogenesis protein NIP7 homolog, humanhuman

Known RBP eCLIP

Length 180 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NIP7Q9Y221 HSPA8-201ENST00000227378 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.093e-26■□□□□ 9.3
NIP7Q9Y221 HSPA8-218ENST00000532636 2306 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.573e-26■□□□□ 9.3
NIP7Q9Y221 HSPA8-215ENST00000532091 2301 ntTSL 510.87□□□□□ -0.673e-26■□□□□ 9.3
NIP7Q9Y221 HSPA8-220ENST00000533238 465 ntTSL 38.15□□□□□ -1.13e-26■□□□□ 9.3
NIP7Q9Y221 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC23.41■■□□□ 1.342e-9■□□□□ 9.3
NIP7Q9Y221 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.162e-9■□□□□ 9.3
NIP7Q9Y221 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC18■□□□□ 0.472e-10■□□□□ 9.3
NIP7Q9Y221 C2-204ENST00000413154 561 ntTSL 417.89■□□□□ 0.452e-10■□□□□ 9.3
NIP7Q9Y221 C2-207ENST00000447952 837 ntTSL 317.79■□□□□ 0.442e-10■□□□□ 9.3
NIP7Q9Y221 C2-208ENST00000452202 539 ntTSL 416.72■□□□□ 0.272e-10■□□□□ 9.3
NIP7Q9Y221 CST3-203ENST00000398411 3286 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.132e-9■□□□□ 9.3
NIP7Q9Y221 C3-218ENST00000602229 585 ntTSL 213.32□□□□□ -0.286e-20■□□□□ 9.3
NIP7Q9Y221 SNORD65-201ENST00000391079 73 ntBASIC4.8□□□□□ -1.641e-323■□□□□ 9.2
NIP7Q9Y221 AGRN-208ENST00000479707 584 ntTSL 324.35■■□□□ 1.498e-14■□□□□ 9.2
NIP7Q9Y221 HSPA8-211ENST00000527983 1509 ntTSL 1 (best)14.66□□□□□ -0.061e-323■□□□□ 9.1
NIP7Q9Y221 HSPA8-209ENST00000526862 504 ntTSL 36.05□□□□□ -1.441e-323■□□□□ 9.1
NIP7Q9Y221 SNORD14C-201ENST00000365382 88 ntBASIC-0.5□□□□□ -2.491e-323■□□□□ 9.1
NIP7Q9Y221 DLK1-204ENST00000555747 538 ntTSL 427.85■■■□□ 2.055e-9■□□□□ 9.1
NIP7Q9Y221 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.125e-9■□□□□ 9.1
NIP7Q9Y221 DLK1-203ENST00000392848 555 ntTSL 420.35■□□□□ 0.855e-9■□□□□ 9.1
NIP7Q9Y221 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC18.36■□□□□ 0.535e-9■□□□□ 9.1
NIP7Q9Y221 DLK1-205ENST00000556051 469 ntTSL 2 BASIC17.64■□□□□ 0.415e-9■□□□□ 9.1
NIP7Q9Y221 SNORD111B-201ENST00000408587 80 ntBASIC-3.36□□□□□ -2.957e-39■□□□□ 9.1
NIP7Q9Y221 RPL3-203ENST00000402527 1205 ntTSL 523.74■■□□□ 1.391e-323■□□□□ 9.1
NIP7Q9Y221 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.321e-323■□□□□ 9.1
NIP7Q9Y221 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC18.58■□□□□ 0.561e-323■□□□□ 9.1
NIP7Q9Y221 RPL3-215ENST00000481985 557 ntTSL 217.95■□□□□ 0.461e-323■□□□□ 9.1
NIP7Q9Y221 RPL3-211ENST00000465618 2108 ntTSL 1 (best)17.91■□□□□ 0.461e-323■□□□□ 9.1
NIP7Q9Y221 RPL3-206ENST00000453303 916 ntTSL 517.42■□□□□ 0.381e-323■□□□□ 9.1
NIP7Q9Y221 RPL3-213ENST00000471290 481 ntTSL 214.69□□□□□ -0.061e-323■□□□□ 9.1
NIP7Q9Y221 SNORD83A-201ENST00000386747 95 ntBASIC11.65□□□□□ -0.541e-323■□□□□ 9.1
NIP7Q9Y221 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC26.45■■□□□ 1.831e-8■□□□□ 9
NIP7Q9Y221 SLC39A14-209ENST00000520644 377 ntTSL 526.13■■□□□ 1.771e-8■□□□□ 9
NIP7Q9Y221 SLC39A14-212ENST00000524285 570 ntTSL 423.28■■□□□ 1.321e-8■□□□□ 9
NIP7Q9Y221 SLC39A14-206ENST00000517552 576 ntTSL 322.98■■□□□ 1.271e-8■□□□□ 9
NIP7Q9Y221 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.651e-8■□□□□ 9
NIP7Q9Y221 SLC39A14-211ENST00000522881 560 ntTSL 515.95■□□□□ 0.141e-8■□□□□ 9
NIP7Q9Y221 SLC39A14-204ENST00000381237 4641 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.181e-8■□□□□ 9
NIP7Q9Y221 SLC39A14-203ENST00000359741 4641 ntAPPRIS P3 TSL 2 BASIC13.84□□□□□ -0.191e-8■□□□□ 9
NIP7Q9Y221 SLC39A14-210ENST00000520832 578 ntTSL 411.51□□□□□ -0.571e-8■□□□□ 9
NIP7Q9Y221 SLC39A14-208ENST00000519960 467 ntTSL 410.38□□□□□ -0.751e-8■□□□□ 9
NIP7Q9Y221 RPS2-211ENST00000531065 1548 ntTSL 535.39■■■■□ 3.261e-7■□□□□ 9
NIP7Q9Y221 RPS2-209ENST00000529806 993 ntTSL 3 BASIC34.41■■■■□ 3.11e-7■□□□□ 9
NIP7Q9Y221 RPS2-202ENST00000526522 924 ntTSL 2 BASIC33.99■■■■□ 3.031e-7■□□□□ 9
NIP7Q9Y221 RPS2-205ENST00000527109 1030 ntTSL 1 (best)33.99■■■■□ 3.031e-7■□□□□ 9
NIP7Q9Y221 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC33.85■■■■□ 3.011e-7■□□□□ 9
NIP7Q9Y221 RPS2-210ENST00000530225 765 ntTSL 2 BASIC32.33■■■□□ 2.771e-7■□□□□ 9
NIP7Q9Y221 RPS2-208ENST00000527871 1243 ntTSL 1 (best)32.21■■■□□ 2.751e-7■□□□□ 9
NIP7Q9Y221 RPS2-213ENST00000533161 1186 ntTSL 1 (best)31.76■■■□□ 2.671e-7■□□□□ 9
NIP7Q9Y221 RPS2-215ENST00000533872 1114 ntTSL 531.44■■■□□ 2.621e-7■□□□□ 9
NIP7Q9Y221 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC26.41■■□□□ 1.821e-7■□□□□ 9
NIP7Q9Y221 SLC13A5-212ENST00000576323 574 ntTSL 421.46■■□□□ 1.031e-7■□□□□ 9
NIP7Q9Y221 SLC13A5-206ENST00000572352 538 ntTSL 420.16■□□□□ 0.821e-7■□□□□ 9
NIP7Q9Y221 SLC13A5-205ENST00000572094 986 ntTSL 519.9■□□□□ 0.781e-7■□□□□ 9
NIP7Q9Y221 RACK1-203ENST00000502844 1460 ntTSL 318.96■□□□□ 0.634e-11■□□□□ 9
NIP7Q9Y221 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC18.7■□□□□ 0.581e-7■□□□□ 9
NIP7Q9Y221 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC17.3■□□□□ 0.361e-7■□□□□ 9
NIP7Q9Y221 RACK1-230ENST00000513060 1651 ntTSL 517.19■□□□□ 0.344e-11■□□□□ 9
NIP7Q9Y221 RACK1-202ENST00000502548 1090 ntTSL 1 (best)16.83■□□□□ 0.284e-11■□□□□ 9
NIP7Q9Y221 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.281e-7■□□□□ 9
NIP7Q9Y221 PSAP-203ENST00000493143 576 ntTSL 216.13■□□□□ 0.171e-7■□□□□ 9
NIP7Q9Y221 SLC13A5-210ENST00000574824 2506 ntTSL 215.39■□□□□ 0.051e-7■□□□□ 9
NIP7Q9Y221 RACK1-223ENST00000510199 1100 ntTSL 315.08■□□□□ 04e-11■□□□□ 9
NIP7Q9Y221 RACK1-229ENST00000513027 697 ntTSL 315.08■□□□□ 04e-11■□□□□ 9
NIP7Q9Y221 TNS1-207ENST00000430930 5900 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.031e-7■□□□□ 9
NIP7Q9Y221 TNS1-205ENST00000419504 5921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.031e-7■□□□□ 9
NIP7Q9Y221 G6PC-202ENST00000585489 1097 ntTSL 5 BASIC14.14□□□□□ -0.151e-7■□□□□ 9
NIP7Q9Y221 RACK1-218ENST00000508044 554 ntTSL 513.92□□□□□ -0.184e-11■□□□□ 9
NIP7Q9Y221 RACK1-227ENST00000512805 1403 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.184e-11■□□□□ 9
NIP7Q9Y221 TNS1-220ENST00000611415 6509 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.261e-7■□□□□ 9
NIP7Q9Y221 RACK1-204ENST00000502890 705 ntTSL 313.15□□□□□ -0.34e-11■□□□□ 9
NIP7Q9Y221 RACK1-224ENST00000511473 1150 ntTSL 513.01□□□□□ -0.334e-11■□□□□ 9
NIP7Q9Y221 RACK1-225ENST00000511566 825 ntTSL 3 BASIC13.01□□□□□ -0.334e-11■□□□□ 9
NIP7Q9Y221 RACK1-226ENST00000511900 922 ntTSL 5 BASIC12.94□□□□□ -0.344e-11■□□□□ 9
NIP7Q9Y221 RACK1-219ENST00000508682 1208 ntTSL 512.79□□□□□ -0.364e-11■□□□□ 9
NIP7Q9Y221 TNS1-221ENST00000615025 6488 ntTSL 5 BASIC12.65□□□□□ -0.381e-7■□□□□ 9
NIP7Q9Y221 RACK1-234ENST00000515417 873 ntTSL 312.58□□□□□ -0.44e-11■□□□□ 9
NIP7Q9Y221 RPS2-203ENST00000526586 878 ntTSL 212.46□□□□□ -0.411e-7■□□□□ 9
NIP7Q9Y221 RACK1-228ENST00000512968 1058 ntTSL 512.23□□□□□ -0.454e-11■□□□□ 9
NIP7Q9Y221 G6PC-204ENST00000592383 987 ntTSL 2 BASIC12.14□□□□□ -0.471e-7■□□□□ 9
NIP7Q9Y221 RACK1-205ENST00000502905 643 ntTSL 312.13□□□□□ -0.474e-11■□□□□ 9
NIP7Q9Y221 RACK1-208ENST00000503494 843 ntTSL 312.09□□□□□ -0.474e-11■□□□□ 9
NIP7Q9Y221 RACK1-210ENST00000504325 1098 ntTSL 1 (best)11.97□□□□□ -0.494e-11■□□□□ 9
NIP7Q9Y221 SLC13A5-201ENST00000293800 3176 ntTSL 2 BASIC11.77□□□□□ -0.531e-7■□□□□ 9
NIP7Q9Y221 RPS2-212ENST00000532746 931 ntTSL 311.73□□□□□ -0.531e-7■□□□□ 9
NIP7Q9Y221 RPS2-214ENST00000533186 625 ntTSL 311.73□□□□□ -0.531e-7■□□□□ 9
NIP7Q9Y221 RACK1-217ENST00000507756 889 ntTSL 511.58□□□□□ -0.564e-11■□□□□ 9
NIP7Q9Y221 RACK1-222ENST00000509535 456 ntTSL 311.58□□□□□ -0.564e-11■□□□□ 9
NIP7Q9Y221 TNS1-209ENST00000446688 4292 ntTSL 1 (best) BASIC11.51□□□□□ -0.571e-7■□□□□ 9
NIP7Q9Y221 RACK1-211ENST00000504726 388 ntTSL 5 BASIC11.22□□□□□ -0.614e-11■□□□□ 9
NIP7Q9Y221 RACK1-206ENST00000503081 587 ntTSL 311.17□□□□□ -0.624e-11■□□□□ 9
NIP7Q9Y221 RACK1-201ENST00000376817 965 ntTSL 5 BASIC10.94□□□□□ -0.664e-11■□□□□ 9
NIP7Q9Y221 RACK1-209ENST00000504128 990 ntTSL 210.94□□□□□ -0.664e-11■□□□□ 9
NIP7Q9Y221 RACK1-213ENST00000506312 559 ntTSL 510.94□□□□□ -0.664e-11■□□□□ 9
NIP7Q9Y221 TNS1-201ENST00000171887 10331 ntAPPRIS P3 TSL 1 (best) BASIC10.07□□□□□ -0.81e-7■□□□□ 9
NIP7Q9Y221 G6PC-203ENST00000588481 604 ntTSL 29.2□□□□□ -0.941e-7■□□□□ 9
NIP7Q9Y221 RACK1-214ENST00000507000 685 ntTSL 59.17□□□□□ -0.944e-11■□□□□ 9
NIP7Q9Y221 RACK1-231ENST00000514183 1439 ntTSL 28.55□□□□□ -1.044e-11■□□□□ 9
NIP7Q9Y221 G6PC-201ENST00000253801 3096 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.231e-7■□□□□ 9
NIP7Q9Y221 MT-TM-201ENST00000387377 68 ntBASIC-2.45□□□□□ -2.81e-323■□□□□ 8.9
Retrieved 100 of 1,619 protein–RNA pairs in 90.7 ms