RNA–Protein interactions for RNA: ENST00000514183.5

RACK1-231, Transcript of receptor for activated C kinase 1, human

TSL 2

Gene RACK1, Length 1,439 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RACK1-231	ENST00000514183	CHIC1	Q5VXU3	224 aa		16.19	■□□□□ 0.18
RACK1-231	ENST00000514183	AEBP2	Q6ZN18	517 aa	Predicted RBP	16.19	■□□□□ 0.18
RACK1-231	ENST00000514183	NISCH	Q9Y2I1	1504 aa		16.15	■□□□□ 0.18
RACK1-231	ENST00000514183	ABCC9	O60706	1549 aa		14.8	□□□□□ -0.04
RACK1-231	ENST00000514183	CCDC180	Q9P1Z9	1646 aa		14.7	□□□□□ -0.06
RACK1-231	ENST00000514183	PHF23	Q9BUL5	403 aa	Predicted RBP	14.37	□□□□□ -0.11
RACK1-231	ENST00000514183	RB1CC1	Q8TDY2	1594 aa		14.12	□□□□□ -0.15
RACK1-231	ENST00000514183	DNAJC5B	Q9UF47	199 aa		14.02	□□□□□ -0.16
RACK1-231	ENST00000514183	NACAD	O15069	1562 aa		13.96	□□□□□ -0.17
RACK1-231	ENST00000514183	DCAF8L2	P0C7V8	631 aa		13.74	□□□□□ -0.21
RACK1-231	ENST00000514183	MYO15B	Q96JP2	1530 aa		13.72	□□□□□ -0.21
RACK1-231	ENST00000514183	PABPN1	Q86U42	306 aa	Known RBP eCLIP	13.71	□□□□□ -0.22
RACK1-231	ENST00000514183	UNC13A	Q9UPW8	1703 aa		13.7	□□□□□ -0.22
RACK1-231	ENST00000514183	SHROOM4	Q9ULL8	1493 aa		13.58	□□□□□ -0.24
RACK1-231	ENST00000514183	BICRA	Q9NZM4	1560 aa		13.57	□□□□□ -0.24
RACK1-231	ENST00000514183	SENP3	Q9H4L4	574 aa	Predicted RBP	13.54	□□□□□ -0.24
RACK1-231	ENST00000514183	CECR2	Q9BXF3	1484 aa		13.42	□□□□□ -0.26
RACK1-231	ENST00000514183	DCAF1	Q9Y4B6	1507 aa		13.41	□□□□□ -0.26
RACK1-231	ENST00000514183	CC2D2A	Q9P2K1	1620 aa		13.4	□□□□□ -0.26
RACK1-231	ENST00000514183	PLPPR3	Q6T4P5	718 aa		13.34	□□□□□ -0.27
RACK1-231	ENST00000514183	EIF4G1	Q04637	1599 aa	Known RBP	13.32	□□□□□ -0.28
RACK1-231	ENST00000514183	ZCCHC6	Q5VYS8	1495 aa	Known RBP	13.31	□□□□□ -0.28
RACK1-231	ENST00000514183	SCRIB	Q14160	1630 aa		13.23	□□□□□ -0.29
RACK1-231	ENST00000514183	DNAJC5	Q9H3Z4	198 aa		13.23	□□□□□ -0.29
RACK1-231	ENST00000514183	CUX2	O14529	1486 aa		13	□□□□□ -0.33
RACK1-231	ENST00000514183	ERCC6	Q03468	1493 aa		12.9	□□□□□ -0.34
RACK1-231	ENST00000514183	NCAPD3	P42695	1498 aa		12.85	□□□□□ -0.35
RACK1-231	ENST00000514183	SMARCA2	P51531	1590 aa		12.77	□□□□□ -0.37
RACK1-231	ENST00000514183	HMGXB3	Q12766	1538 aa		12.75	□□□□□ -0.37
RACK1-231	ENST00000514183	ATAD2B	Q9ULI0	1458 aa		12.72	□□□□□ -0.37
RACK1-231	ENST00000514183	SMARCA4	P51532	1647 aa		12.66	□□□□□ -0.38
RACK1-231	ENST00000514183	ADRA2B	P18089	450 aa		12.64	□□□□□ -0.39
RACK1-231	ENST00000514183	LAMC3	Q9Y6N6	1575 aa		12.64	□□□□□ -0.39
RACK1-231	ENST00000514183	BAZ1B	Q9UIG0	1483 aa	Known RBP	12.63	□□□□□ -0.39
RACK1-231	ENST00000514183	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	12.62	□□□□□ -0.39
RACK1-231	ENST00000514183	FOXD1	Q16676	465 aa		12.6	□□□□□ -0.39
RACK1-231	ENST00000514183	PDS5B	Q9NTI5	1447 aa		12.59	□□□□□ -0.39
RACK1-231	ENST00000514183	NES	P48681	1621 aa		12.59	□□□□□ -0.39
RACK1-231	ENST00000514183	THOC2	Q8NI27	1593 aa	Known RBP	12.58	□□□□□ -0.4
RACK1-231	ENST00000514183	PEG3	Q9GZU2	1588 aa		12.58	□□□□□ -0.4
RACK1-231	ENST00000514183	PPP6R1	Q9UPN7	881 aa		12.56	□□□□□ -0.4
RACK1-231	ENST00000514183	KIF21A	Q7Z4S6	1674 aa		12.5	□□□□□ -0.41
RACK1-231	ENST00000514183	TRIM41	Q8WV44	630 aa		12.48	□□□□□ -0.41
RACK1-231	ENST00000514183	CADPS	Q9ULU8	1353 aa		12.45	□□□□□ -0.42
RACK1-231	ENST00000514183	MRC2	Q9UBG0	1479 aa		12.43	□□□□□ -0.42
RACK1-231	ENST00000514183	WDR62	O43379	1518 aa		12.4	□□□□□ -0.43
RACK1-231	ENST00000514183	OSCAR	Q8IYS5	282 aa		12.37	□□□□□ -0.43
RACK1-231	ENST00000514183	MROH2B	Q7Z745	1585 aa		12.36	□□□□□ -0.43
RACK1-231	ENST00000514183	CEP164	Q9UPV0	1460 aa		12.34	□□□□□ -0.43
RACK1-231	ENST00000514183	FANCD2	Q9BXW9	1451 aa		12.27	□□□□□ -0.44
RACK1-231	ENST00000514183	CFTR	P13569	1480 aa		12.23	□□□□□ -0.45
RACK1-231	ENST00000514183	KCNA4	P22459	653 aa		12.22	□□□□□ -0.45
RACK1-231	ENST00000514183	WIZ	O95785	1651 aa		12.22	□□□□□ -0.45
RACK1-231	ENST00000514183	PRDM2	Q13029	1718 aa		12.16	□□□□□ -0.46
RACK1-231	ENST00000514183	RIMBP3C	A6NJZ7	1639 aa		12.14	□□□□□ -0.47
RACK1-231	ENST00000514183	RIMBP3B	A6NNM3	1639 aa		12.14	□□□□□ -0.47
RACK1-231	ENST00000514183	RIMBP3	Q9UFD9	1639 aa		12.14	□□□□□ -0.47
RACK1-231	ENST00000514183	URB2	Q14146	1524 aa	Known RBP	12.13	□□□□□ -0.47
RACK1-231	ENST00000514183	IFT140	Q96RY7	1462 aa		12.12	□□□□□ -0.47
RACK1-231	ENST00000514183	ABCC8	Q09428	1581 aa		12.12	□□□□□ -0.47
RACK1-231	ENST00000514183	TOP2A	P11388	1531 aa	Known RBP	12.11	□□□□□ -0.47
RACK1-231	ENST00000514183	ARHGEF11	O15085	1522 aa		12.08	□□□□□ -0.48
RACK1-231	ENST00000514183	RSF1	Q96T23	1441 aa	Predicted RBP	12.05	□□□□□ -0.48
RACK1-231	ENST00000514183	EHMT2	Q96KQ7	1210 aa		12.03	□□□□□ -0.48
RACK1-231	ENST00000514183	CYB5RL	Q6IPT4	315 aa		12.02	□□□□□ -0.49
RACK1-231	ENST00000514183	TRH	P20396	242 aa	Predicted RBP	12.01	□□□□□ -0.49
RACK1-231	ENST00000514183	PIAS4	Q8N2W9	510 aa	Predicted RBP	12.01	□□□□□ -0.49
RACK1-231	ENST00000514183	TOPBP1	Q92547	1522 aa		12	□□□□□ -0.49
RACK1-231	ENST00000514183	ZNF608	Q9ULD9	1512 aa	Predicted RBP	11.99	□□□□□ -0.49
RACK1-231	ENST00000514183	EIF4G3	O43432	1585 aa	Known RBP	11.98	□□□□□ -0.49
RACK1-231	ENST00000514183	DNMBP	Q6XZF7	1577 aa		11.97	□□□□□ -0.49
RACK1-231	ENST00000514183	CHD1	O14646	1710 aa		11.95	□□□□□ -0.5
RACK1-231	ENST00000514183	CCDC88B	A6NC98	1476 aa		11.93	□□□□□ -0.5
RACK1-231	ENST00000514183	FBLN2	P98095	1184 aa		11.93	□□□□□ -0.5
RACK1-231	ENST00000514183	WDR97	A6NE52	1622 aa		11.92	□□□□□ -0.5
RACK1-231	ENST00000514183	TARBP1	Q13395	1621 aa	Known RBP	11.91	□□□□□ -0.5
RACK1-231	ENST00000514183	ARAP1	Q96P48	1450 aa		11.9	□□□□□ -0.5
RACK1-231	ENST00000514183	PPP4R3CP	Q6ZMV5	832 aa		11.89	□□□□□ -0.51
RACK1-231	ENST00000514183	AQR	O60306	1485 aa	Known RBP eCLIP	11.89	□□□□□ -0.51	1e-12	■■■■■ 75.3
RACK1-231	ENST00000514183	SYNJ1	O43426	1573 aa		11.86	□□□□□ -0.51
RACK1-231	ENST00000514183	POLA1	P09884	1462 aa	Predicted RBP	11.85	□□□□□ -0.51
RACK1-231	ENST00000514183	CHMP7	Q8WUX9	453 aa	Predicted RBP	11.85	□□□□□ -0.51
RACK1-231	ENST00000514183	MAGI1	Q96QZ7	1491 aa	Predicted RBP	11.83	□□□□□ -0.52
RACK1-231	ENST00000514183	SOGA1	O94964	1423 aa		11.83	□□□□□ -0.52
RACK1-231	ENST00000514183	CLASP1	Q7Z460	1538 aa		11.8	□□□□□ -0.52
RACK1-231	ENST00000514183	GRIN2B	Q13224	1484 aa		11.78	□□□□□ -0.52
RACK1-231	ENST00000514183	TDRD9	Q8NDG6	1382 aa	Known RBP	11.77	□□□□□ -0.52
RACK1-231	ENST00000514183	SYNJ2	O15056	1496 aa		11.77	□□□□□ -0.53
RACK1-231	ENST00000514183	SNAPC4	Q5SXM2	1469 aa		11.77	□□□□□ -0.53
RACK1-231	ENST00000514183	RAD54L2	Q9Y4B4	1467 aa		11.75	□□□□□ -0.53
RACK1-231	ENST00000514183	FGD5	Q6ZNL6	1462 aa		11.73	□□□□□ -0.53
RACK1-231	ENST00000514183	GAPVD1	Q14C86	1478 aa		11.72	□□□□□ -0.53
RACK1-231	ENST00000514183	PBRM1	Q86U86	1689 aa		11.69	□□□□□ -0.54
RACK1-231	ENST00000514183	SUPT5H	O00267	1087 aa	Known RBP	11.69	□□□□□ -0.54
RACK1-231	ENST00000514183	SLC4A1AP	Q9BWU0	796 aa	Known RBP	11.69	□□□□□ -0.54
RACK1-231	ENST00000514183	CUX1	P39880	1505 aa		11.65	□□□□□ -0.54
RACK1-231	ENST00000514183	NCBP3	Q53F19	620 aa	Known RBP	11.64	□□□□□ -0.55
RACK1-231	ENST00000514183	ABCA10	Q8WWZ4	1543 aa		11.63	□□□□□ -0.55
RACK1-231	ENST00000514183	ABCA5	Q8WWZ7	1642 aa		11.6	□□□□□ -0.55
RACK1-231	ENST00000514183	GRIN2A	Q12879	1464 aa		11.59	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 125.1 ms