Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC29.66■■■□□ 2.34
ZNF541Q9H0D2 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC29.65■■■□□ 2.34
ZNF541Q9H0D2 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
ZNF541Q9H0D2 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
ZNF541Q9H0D2 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC29.65■■■□□ 2.34
ZNF541Q9H0D2 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC29.65■■■□□ 2.34
ZNF541Q9H0D2 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC29.65■■■□□ 2.34
ZNF541Q9H0D2 WHAMMP3-201ENST00000611636 1609 ntBASIC29.64■■■□□ 2.34
ZNF541Q9H0D2 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC29.64■■■□□ 2.34
ZNF541Q9H0D2 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC29.64■■■□□ 2.34
ZNF541Q9H0D2 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC29.64■■■□□ 2.34
ZNF541Q9H0D2 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
ZNF541Q9H0D2 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC29.62■■■□□ 2.33
ZNF541Q9H0D2 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC29.62■■■□□ 2.33
ZNF541Q9H0D2 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC29.62■■■□□ 2.33
ZNF541Q9H0D2 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC29.62■■■□□ 2.33
ZNF541Q9H0D2 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC29.62■■■□□ 2.33
ZNF541Q9H0D2 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
ZNF541Q9H0D2 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC29.62■■■□□ 2.33
ZNF541Q9H0D2 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
ZNF541Q9H0D2 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC29.62■■■□□ 2.33
ZNF541Q9H0D2 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
ZNF541Q9H0D2 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC29.61■■■□□ 2.33
ZNF541Q9H0D2 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC29.61■■■□□ 2.33
ZNF541Q9H0D2 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
ZNF541Q9H0D2 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC29.61■■■□□ 2.33
ZNF541Q9H0D2 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC29.6■■■□□ 2.33
ZNF541Q9H0D2 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC29.59■■■□□ 2.33
ZNF541Q9H0D2 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
ZNF541Q9H0D2 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC29.59■■■□□ 2.33
ZNF541Q9H0D2 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC29.59■■■□□ 2.33
ZNF541Q9H0D2 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC29.59■■■□□ 2.33
ZNF541Q9H0D2 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
ZNF541Q9H0D2 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC29.59■■■□□ 2.33
ZNF541Q9H0D2 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
ZNF541Q9H0D2 AC022616.5-201ENST00000518796 181 ntBASIC29.58■■■□□ 2.33
ZNF541Q9H0D2 AC137630.3-201ENST00000607245 391 ntBASIC29.58■■■□□ 2.33
ZNF541Q9H0D2 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC29.58■■■□□ 2.33
ZNF541Q9H0D2 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
ZNF541Q9H0D2 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
ZNF541Q9H0D2 KRT18P24-201ENST00000344739 1156 ntBASIC29.57■■■□□ 2.32
ZNF541Q9H0D2 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC29.57■■■□□ 2.32
ZNF541Q9H0D2 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC29.57■■■□□ 2.32
ZNF541Q9H0D2 RPP21-222ENST00000433076 577 ntTSL 2 BASIC29.57■■■□□ 2.32
ZNF541Q9H0D2 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC29.57■■■□□ 2.32
ZNF541Q9H0D2 AC021242.3-201ENST00000607598 1377 ntBASIC29.57■■■□□ 2.32
ZNF541Q9H0D2 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
ZNF541Q9H0D2 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
ZNF541Q9H0D2 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC29.56■■■□□ 2.32
ZNF541Q9H0D2 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC29.56■■■□□ 2.32
ZNF541Q9H0D2 AC110285.6-201ENST00000617652 491 ntBASIC29.56■■■□□ 2.32
ZNF541Q9H0D2 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC29.56■■■□□ 2.32
ZNF541Q9H0D2 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC29.56■■■□□ 2.32
ZNF541Q9H0D2 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC29.55■■■□□ 2.32
ZNF541Q9H0D2 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC29.55■■■□□ 2.32
ZNF541Q9H0D2 AL136116.3-201ENST00000402907 1138 ntBASIC29.55■■■□□ 2.32
ZNF541Q9H0D2 SRR-208ENST00000576848 588 ntTSL 4 BASIC29.55■■■□□ 2.32
ZNF541Q9H0D2 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC29.55■■■□□ 2.32
ZNF541Q9H0D2 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC29.54■■■□□ 2.32
ZNF541Q9H0D2 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC29.54■■■□□ 2.32
ZNF541Q9H0D2 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC29.54■■■□□ 2.32
ZNF541Q9H0D2 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
ZNF541Q9H0D2 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC29.53■■■□□ 2.32
ZNF541Q9H0D2 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC29.53■■■□□ 2.32
ZNF541Q9H0D2 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC29.52■■■□□ 2.32
ZNF541Q9H0D2 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC29.51■■■□□ 2.32
ZNF541Q9H0D2 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC29.51■■■□□ 2.32
ZNF541Q9H0D2 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC29.51■■■□□ 2.32
ZNF541Q9H0D2 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC29.51■■■□□ 2.31
ZNF541Q9H0D2 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC29.5■■■□□ 2.31
ZNF541Q9H0D2 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
ZNF541Q9H0D2 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
ZNF541Q9H0D2 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC29.5■■■□□ 2.31
ZNF541Q9H0D2 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC29.5■■■□□ 2.31
ZNF541Q9H0D2 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
ZNF541Q9H0D2 AC120024.1-201ENST00000562672 995 ntBASIC29.48■■■□□ 2.31
ZNF541Q9H0D2 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC29.48■■■□□ 2.31
ZNF541Q9H0D2 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC29.48■■■□□ 2.31
ZNF541Q9H0D2 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC29.48■■■□□ 2.31
ZNF541Q9H0D2 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
ZNF541Q9H0D2 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
ZNF541Q9H0D2 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC29.47■■■□□ 2.31
ZNF541Q9H0D2 AC092028.1-203ENST00000608262 953 ntBASIC29.47■■■□□ 2.31
ZNF541Q9H0D2 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC29.47■■■□□ 2.31
ZNF541Q9H0D2 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC29.47■■■□□ 2.31
ZNF541Q9H0D2 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC29.46■■■□□ 2.31
ZNF541Q9H0D2 AL117332.1-201ENST00000622628 974 ntBASIC29.46■■■□□ 2.31
ZNF541Q9H0D2 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC29.46■■■□□ 2.31
ZNF541Q9H0D2 AC005837.3-201ENST00000612163 286 ntBASIC29.45■■■□□ 2.31
ZNF541Q9H0D2 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC29.45■■■□□ 2.31
ZNF541Q9H0D2 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC29.45■■■□□ 2.3
ZNF541Q9H0D2 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.3
ZNF541Q9H0D2 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC29.45■■■□□ 2.3
ZNF541Q9H0D2 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC29.45■■■□□ 2.3
ZNF541Q9H0D2 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.3
ZNF541Q9H0D2 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC29.45■■■□□ 2.3
ZNF541Q9H0D2 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC29.45■■■□□ 2.3
ZNF541Q9H0D2 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC29.45■■■□□ 2.3
ZNF541Q9H0D2 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC29.44■■■□□ 2.3
ZNF541Q9H0D2 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC29.44■■■□□ 2.3
Retrieved 100 of 98,524 protein–RNA pairs in 88.9 ms