Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
VPS13AQ96RL7 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
VPS13AQ96RL7 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
VPS13AQ96RL7 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC24.46■■□□□ 1.51
VPS13AQ96RL7 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
VPS13AQ96RL7 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC24.46■■□□□ 1.51
VPS13AQ96RL7 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC24.46■■□□□ 1.51
VPS13AQ96RL7 RPS2P7-201ENST00000447334 885 ntBASIC24.46■■□□□ 1.51
VPS13AQ96RL7 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC24.45■■□□□ 1.5
VPS13AQ96RL7 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC24.45■■□□□ 1.5
VPS13AQ96RL7 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
VPS13AQ96RL7 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
VPS13AQ96RL7 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC24.43■■□□□ 1.5
VPS13AQ96RL7 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
VPS13AQ96RL7 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC24.43■■□□□ 1.5
VPS13AQ96RL7 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC24.43■■□□□ 1.5
VPS13AQ96RL7 TSPY9P-201ENST00000440215 945 ntBASIC24.42■■□□□ 1.5
VPS13AQ96RL7 TSPY11P-201ENST00000442607 1045 ntBASIC24.42■■□□□ 1.5
VPS13AQ96RL7 AL117332.1-201ENST00000622628 974 ntBASIC24.42■■□□□ 1.5
VPS13AQ96RL7 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
VPS13AQ96RL7 AC021242.3-201ENST00000607598 1377 ntBASIC24.41■■□□□ 1.5
VPS13AQ96RL7 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC24.41■■□□□ 1.5
VPS13AQ96RL7 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC24.41■■□□□ 1.5
VPS13AQ96RL7 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC24.41■■□□□ 1.5
VPS13AQ96RL7 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC24.41■■□□□ 1.5
VPS13AQ96RL7 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC24.41■■□□□ 1.5
VPS13AQ96RL7 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC24.41■■□□□ 1.5
VPS13AQ96RL7 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC24.4■■□□□ 1.5
VPS13AQ96RL7 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
VPS13AQ96RL7 RPP21-222ENST00000433076 577 ntTSL 2 BASIC24.4■■□□□ 1.5
VPS13AQ96RL7 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC24.4■■□□□ 1.5
VPS13AQ96RL7 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
VPS13AQ96RL7 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC24.4■■□□□ 1.5
VPS13AQ96RL7 TK2-202ENST00000417693 1046 ntTSL 2 BASIC24.4■■□□□ 1.5
VPS13AQ96RL7 SUDS3P1-201ENST00000505831 966 ntBASIC24.4■■□□□ 1.5
VPS13AQ96RL7 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
VPS13AQ96RL7 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
VPS13AQ96RL7 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC24.39■■□□□ 1.5
VPS13AQ96RL7 AL512631.2-201ENST00000604634 923 ntBASIC24.39■■□□□ 1.5
VPS13AQ96RL7 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC24.39■■□□□ 1.5
VPS13AQ96RL7 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
VPS13AQ96RL7 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC24.39■■□□□ 1.49
VPS13AQ96RL7 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC24.39■■□□□ 1.49
VPS13AQ96RL7 AC092028.1-203ENST00000608262 953 ntBASIC24.39■■□□□ 1.49
VPS13AQ96RL7 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC24.38■■□□□ 1.49
VPS13AQ96RL7 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
VPS13AQ96RL7 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
VPS13AQ96RL7 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
VPS13AQ96RL7 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC24.38■■□□□ 1.49
VPS13AQ96RL7 SRR-208ENST00000576848 588 ntTSL 4 BASIC24.38■■□□□ 1.49
VPS13AQ96RL7 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC24.37■■□□□ 1.49
VPS13AQ96RL7 QDPR-206ENST00000508623 601 ntTSL 3 BASIC24.37■■□□□ 1.49
VPS13AQ96RL7 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
VPS13AQ96RL7 MIR3621-201ENST00000580529 85 ntBASIC24.37■■□□□ 1.49
VPS13AQ96RL7 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
VPS13AQ96RL7 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC24.37■■□□□ 1.49
VPS13AQ96RL7 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC24.37■■□□□ 1.49
VPS13AQ96RL7 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC24.36■■□□□ 1.49
VPS13AQ96RL7 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
VPS13AQ96RL7 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC24.36■■□□□ 1.49
VPS13AQ96RL7 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
VPS13AQ96RL7 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC24.35■■□□□ 1.49
VPS13AQ96RL7 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
VPS13AQ96RL7 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
VPS13AQ96RL7 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC24.35■■□□□ 1.49
VPS13AQ96RL7 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC24.34■■□□□ 1.49
VPS13AQ96RL7 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC24.34■■□□□ 1.49
VPS13AQ96RL7 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC24.34■■□□□ 1.49
VPS13AQ96RL7 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
VPS13AQ96RL7 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC24.34■■□□□ 1.49
VPS13AQ96RL7 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC24.34■■□□□ 1.49
VPS13AQ96RL7 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
VPS13AQ96RL7 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.49
VPS13AQ96RL7 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC24.33■■□□□ 1.49
VPS13AQ96RL7 AC137630.3-201ENST00000607245 391 ntBASIC24.33■■□□□ 1.49
VPS13AQ96RL7 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
VPS13AQ96RL7 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC24.33■■□□□ 1.48
VPS13AQ96RL7 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
VPS13AQ96RL7 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC24.32■■□□□ 1.48
VPS13AQ96RL7 AC106739.1-201ENST00000617035 715 ntBASIC24.32■■□□□ 1.48
VPS13AQ96RL7 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
VPS13AQ96RL7 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
VPS13AQ96RL7 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
VPS13AQ96RL7 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC24.31■■□□□ 1.48
VPS13AQ96RL7 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
VPS13AQ96RL7 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
VPS13AQ96RL7 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC24.3■■□□□ 1.48
VPS13AQ96RL7 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
VPS13AQ96RL7 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC24.3■■□□□ 1.48
VPS13AQ96RL7 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC24.29■■□□□ 1.48
VPS13AQ96RL7 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC24.29■■□□□ 1.48
VPS13AQ96RL7 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
VPS13AQ96RL7 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC24.29■■□□□ 1.48
VPS13AQ96RL7 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
VPS13AQ96RL7 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC24.29■■□□□ 1.48
VPS13AQ96RL7 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
VPS13AQ96RL7 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
VPS13AQ96RL7 AL031432.3-201ENST00000607698 485 ntBASIC24.29■■□□□ 1.48
VPS13AQ96RL7 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC24.28■■□□□ 1.48
VPS13AQ96RL7 LSM4-201ENST00000252816 986 ntTSL 2 BASIC24.28■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms