Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PDLIM3Q53GG5 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PDLIM3Q53GG5 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PDLIM3Q53GG5 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC19.81■□□□□ 0.76
PDLIM3Q53GG5 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
PDLIM3Q53GG5 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
PDLIM3Q53GG5 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC19.81■□□□□ 0.76
PDLIM3Q53GG5 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PDLIM3Q53GG5 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC19.8■□□□□ 0.76
PDLIM3Q53GG5 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
PDLIM3Q53GG5 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
PDLIM3Q53GG5 AC110285.7-201ENST00000624417 1536 ntBASIC19.8■□□□□ 0.76
PDLIM3Q53GG5 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
PDLIM3Q53GG5 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
PDLIM3Q53GG5 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC19.79■□□□□ 0.76
PDLIM3Q53GG5 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
PDLIM3Q53GG5 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
PDLIM3Q53GG5 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PDLIM3Q53GG5 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC19.78■□□□□ 0.76
PDLIM3Q53GG5 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
PDLIM3Q53GG5 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
PDLIM3Q53GG5 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC19.78■□□□□ 0.76
PDLIM3Q53GG5 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PDLIM3Q53GG5 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PDLIM3Q53GG5 CHST11-202ENST00000546689 756 ntTSL 2 BASIC19.78■□□□□ 0.76
PDLIM3Q53GG5 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC19.78■□□□□ 0.76
PDLIM3Q53GG5 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
PDLIM3Q53GG5 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
PDLIM3Q53GG5 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
PDLIM3Q53GG5 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
PDLIM3Q53GG5 WHAMMP3-201ENST00000611636 1609 ntBASIC19.77■□□□□ 0.76
PDLIM3Q53GG5 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
PDLIM3Q53GG5 U85056.1-201ENST00000616429 682 ntBASIC19.77■□□□□ 0.76
PDLIM3Q53GG5 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
PDLIM3Q53GG5 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
PDLIM3Q53GG5 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
PDLIM3Q53GG5 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PDLIM3Q53GG5 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
PDLIM3Q53GG5 AL035685.1-201ENST00000636663 812 ntBASIC19.76■□□□□ 0.75
PDLIM3Q53GG5 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PDLIM3Q53GG5 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC19.76■□□□□ 0.75
PDLIM3Q53GG5 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PDLIM3Q53GG5 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
PDLIM3Q53GG5 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
PDLIM3Q53GG5 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
PDLIM3Q53GG5 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC19.75■□□□□ 0.75
PDLIM3Q53GG5 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PDLIM3Q53GG5 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PDLIM3Q53GG5 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PDLIM3Q53GG5 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
PDLIM3Q53GG5 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
PDLIM3Q53GG5 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
PDLIM3Q53GG5 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
PDLIM3Q53GG5 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
PDLIM3Q53GG5 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
PDLIM3Q53GG5 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC19.74■□□□□ 0.75
PDLIM3Q53GG5 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
PDLIM3Q53GG5 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
PDLIM3Q53GG5 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC19.73■□□□□ 0.75
PDLIM3Q53GG5 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC19.73■□□□□ 0.75
PDLIM3Q53GG5 GUK1-208ENST00000366728 842 ntTSL 2 BASIC19.73■□□□□ 0.75
PDLIM3Q53GG5 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PDLIM3Q53GG5 AC004987.1-201ENST00000428627 508 ntBASIC19.73■□□□□ 0.75
PDLIM3Q53GG5 ATP5G2P3-201ENST00000429083 425 ntBASIC19.73■□□□□ 0.75
PDLIM3Q53GG5 TRIR-205ENST00000592273 783 ntTSL 3 BASIC19.73■□□□□ 0.75
PDLIM3Q53GG5 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
PDLIM3Q53GG5 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
PDLIM3Q53GG5 HYI-213ENST00000583037 1322 ntTSL 5 BASIC19.73■□□□□ 0.75
PDLIM3Q53GG5 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PDLIM3Q53GG5 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PDLIM3Q53GG5 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
PDLIM3Q53GG5 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
PDLIM3Q53GG5 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC19.72■□□□□ 0.75
PDLIM3Q53GG5 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PDLIM3Q53GG5 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC19.72■□□□□ 0.75
PDLIM3Q53GG5 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
PDLIM3Q53GG5 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
PDLIM3Q53GG5 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
PDLIM3Q53GG5 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
PDLIM3Q53GG5 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC19.71■□□□□ 0.75
PDLIM3Q53GG5 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PDLIM3Q53GG5 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC19.71■□□□□ 0.75
PDLIM3Q53GG5 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PDLIM3Q53GG5 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
PDLIM3Q53GG5 HES4-204ENST00000484667 667 ntTSL 3 BASIC19.71■□□□□ 0.75
PDLIM3Q53GG5 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
PDLIM3Q53GG5 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
PDLIM3Q53GG5 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
PDLIM3Q53GG5 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
PDLIM3Q53GG5 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
PDLIM3Q53GG5 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC19.7■□□□□ 0.74
PDLIM3Q53GG5 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
PDLIM3Q53GG5 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC19.7■□□□□ 0.74
PDLIM3Q53GG5 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
PDLIM3Q53GG5 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PDLIM3Q53GG5 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PDLIM3Q53GG5 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PDLIM3Q53GG5 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC19.68■□□□□ 0.74
PDLIM3Q53GG5 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PDLIM3Q53GG5 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms