Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
HNF4AP41235 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC23.41■■□□□ 1.34
HNF4AP41235 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
HNF4AP41235 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC23.41■■□□□ 1.34
HNF4AP41235 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
HNF4AP41235 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
HNF4AP41235 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC23.4■■□□□ 1.34
HNF4AP41235 AC010501.1-201ENST00000606270 1962 ntBASIC23.4■■□□□ 1.34
HNF4AP41235 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC23.4■■□□□ 1.34
HNF4AP41235 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC23.4■■□□□ 1.34
HNF4AP41235 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
HNF4AP41235 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
HNF4AP41235 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC23.39■■□□□ 1.34
HNF4AP41235 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC23.39■■□□□ 1.34
HNF4AP41235 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
HNF4AP41235 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
HNF4AP41235 AC092296.2-201ENST00000589470 999 ntBASIC23.39■■□□□ 1.33
HNF4AP41235 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC23.39■■□□□ 1.33
HNF4AP41235 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
HNF4AP41235 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
HNF4AP41235 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
HNF4AP41235 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
HNF4AP41235 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC23.38■■□□□ 1.33
HNF4AP41235 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC23.38■■□□□ 1.33
HNF4AP41235 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC23.38■■□□□ 1.33
HNF4AP41235 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
HNF4AP41235 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
HNF4AP41235 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
HNF4AP41235 ERN1-208ENST00000606895 2068 ntBASIC23.37■■□□□ 1.33
HNF4AP41235 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC23.37■■□□□ 1.33
HNF4AP41235 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
HNF4AP41235 HSD17B1P1-201ENST00000590052 955 ntBASIC23.37■■□□□ 1.33
HNF4AP41235 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC23.37■■□□□ 1.33
HNF4AP41235 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
HNF4AP41235 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
HNF4AP41235 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC23.36■■□□□ 1.33
HNF4AP41235 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC23.36■■□□□ 1.33
HNF4AP41235 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC23.36■■□□□ 1.33
HNF4AP41235 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
HNF4AP41235 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC23.35■■□□□ 1.33
HNF4AP41235 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
HNF4AP41235 PFN2-211ENST00000489155 636 ntTSL 4 BASIC23.35■■□□□ 1.33
HNF4AP41235 AC025884.2-201ENST00000553429 711 ntBASIC23.35■■□□□ 1.33
HNF4AP41235 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
HNF4AP41235 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC23.35■■□□□ 1.33
HNF4AP41235 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
HNF4AP41235 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC23.34■■□□□ 1.33
HNF4AP41235 ECEL1P2-201ENST00000461596 1295 ntBASIC23.34■■□□□ 1.33
HNF4AP41235 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
HNF4AP41235 SMPD5-203ENST00000639008 1464 ntBASIC23.33■■□□□ 1.33
HNF4AP41235 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
HNF4AP41235 HES4-202ENST00000428771 1040 ntTSL 2 BASIC23.33■■□□□ 1.33
HNF4AP41235 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC23.33■■□□□ 1.33
HNF4AP41235 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC23.33■■□□□ 1.33
HNF4AP41235 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC23.33■■□□□ 1.33
HNF4AP41235 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
HNF4AP41235 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
HNF4AP41235 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
HNF4AP41235 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
HNF4AP41235 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
HNF4AP41235 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
HNF4AP41235 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
HNF4AP41235 MIR3960-201ENST00000583311 91 ntBASIC23.31■■□□□ 1.32
HNF4AP41235 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC23.31■■□□□ 1.32
HNF4AP41235 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
HNF4AP41235 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
HNF4AP41235 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
HNF4AP41235 RNF126P1-201ENST00000567452 1320 ntBASIC23.31■■□□□ 1.32
HNF4AP41235 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC23.3■■□□□ 1.32
HNF4AP41235 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
HNF4AP41235 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC23.3■■□□□ 1.32
HNF4AP41235 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC23.3■■□□□ 1.32
HNF4AP41235 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
HNF4AP41235 REST-210ENST00000638187 1334 ntTSL 5 BASIC23.3■■□□□ 1.32
HNF4AP41235 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
HNF4AP41235 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
HNF4AP41235 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
HNF4AP41235 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
HNF4AP41235 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC23.29■■□□□ 1.32
HNF4AP41235 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC23.28■■□□□ 1.32
HNF4AP41235 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
HNF4AP41235 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC23.28■■□□□ 1.32
HNF4AP41235 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
HNF4AP41235 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
HNF4AP41235 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
HNF4AP41235 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
HNF4AP41235 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
HNF4AP41235 BRD4-212ENST00000630599 726 ntTSL 2 BASIC23.27■■□□□ 1.32
HNF4AP41235 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC23.27■■□□□ 1.32
HNF4AP41235 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
HNF4AP41235 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
HNF4AP41235 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC23.26■■□□□ 1.31
HNF4AP41235 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC23.26■■□□□ 1.31
HNF4AP41235 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
HNF4AP41235 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC23.25■■□□□ 1.31
HNF4AP41235 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC23.25■■□□□ 1.31
HNF4AP41235 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC23.25■■□□□ 1.31
HNF4AP41235 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
HNF4AP41235 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC23.25■■□□□ 1.31
HNF4AP41235 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms