Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC23.28■■□□□ 1.32
LSM1O15116 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
LSM1O15116 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC23.27■■□□□ 1.32
LSM1O15116 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC23.27■■□□□ 1.32
LSM1O15116 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC23.27■■□□□ 1.32
LSM1O15116 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
LSM1O15116 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.31
LSM1O15116 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.31
LSM1O15116 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
LSM1O15116 ABHD17AP4-201ENST00000411545 909 ntBASIC23.26■■□□□ 1.31
LSM1O15116 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
LSM1O15116 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC23.25■■□□□ 1.31
LSM1O15116 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC23.25■■□□□ 1.31
LSM1O15116 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
LSM1O15116 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
LSM1O15116 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC23.25■■□□□ 1.31
LSM1O15116 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC23.25■■□□□ 1.31
LSM1O15116 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
LSM1O15116 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC23.24■■□□□ 1.31
LSM1O15116 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC23.24■■□□□ 1.31
LSM1O15116 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
LSM1O15116 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC23.24■■□□□ 1.31
LSM1O15116 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC23.24■■□□□ 1.31
LSM1O15116 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC23.24■■□□□ 1.31
LSM1O15116 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
LSM1O15116 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
LSM1O15116 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
LSM1O15116 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
LSM1O15116 MIR3648-2-201ENST00000581792 180 ntBASIC23.23■■□□□ 1.31
LSM1O15116 MIR3648-1-201ENST00000615959 180 ntBASIC23.23■■□□□ 1.31
LSM1O15116 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
LSM1O15116 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC23.23■■□□□ 1.31
LSM1O15116 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
LSM1O15116 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC23.23■■□□□ 1.31
LSM1O15116 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
LSM1O15116 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC23.22■■□□□ 1.31
LSM1O15116 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC23.22■■□□□ 1.31
LSM1O15116 GDI1-215ENST00000630693 786 ntTSL 4 BASIC23.22■■□□□ 1.31
LSM1O15116 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC23.22■■□□□ 1.31
LSM1O15116 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
LSM1O15116 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
LSM1O15116 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
LSM1O15116 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC23.22■■□□□ 1.31
LSM1O15116 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC23.21■■□□□ 1.31
LSM1O15116 MACF1-219ENST00000484793 834 ntTSL 2 BASIC23.21■■□□□ 1.31
LSM1O15116 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC23.21■■□□□ 1.31
LSM1O15116 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
LSM1O15116 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC23.21■■□□□ 1.31
LSM1O15116 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
LSM1O15116 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
LSM1O15116 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
LSM1O15116 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.3
LSM1O15116 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
LSM1O15116 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC23.2■■□□□ 1.3
LSM1O15116 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
LSM1O15116 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
LSM1O15116 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
LSM1O15116 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
LSM1O15116 AC142381.3-201ENST00000568208 1670 ntBASIC23.19■■□□□ 1.3
LSM1O15116 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
LSM1O15116 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC23.19■■□□□ 1.3
LSM1O15116 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
LSM1O15116 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
LSM1O15116 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
LSM1O15116 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
LSM1O15116 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC23.18■■□□□ 1.3
LSM1O15116 AC093323.1-202ENST00000635031 2045 ntBASIC23.18■■□□□ 1.3
LSM1O15116 AC126177.7-201ENST00000547904 679 ntBASIC23.18■■□□□ 1.3
LSM1O15116 MED17-227ENST00000640521 2047 ntTSL 5 BASIC23.18■■□□□ 1.3
LSM1O15116 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
LSM1O15116 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
LSM1O15116 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
LSM1O15116 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
LSM1O15116 AC022211.4-201ENST00000625094 2161 ntBASIC23.17■■□□□ 1.3
LSM1O15116 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
LSM1O15116 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
LSM1O15116 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC23.16■■□□□ 1.3
LSM1O15116 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC23.16■■□□□ 1.3
LSM1O15116 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
LSM1O15116 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.3
LSM1O15116 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
LSM1O15116 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
LSM1O15116 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
LSM1O15116 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
LSM1O15116 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC23.15■■□□□ 1.3
LSM1O15116 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC23.15■■□□□ 1.3
LSM1O15116 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
LSM1O15116 METRNL-202ENST00000570778 967 ntTSL 5 BASIC23.15■■□□□ 1.3
LSM1O15116 AC016575.1-201ENST00000607026 382 ntBASIC23.15■■□□□ 1.3
LSM1O15116 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
LSM1O15116 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
LSM1O15116 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC23.14■■□□□ 1.29
LSM1O15116 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC23.14■■□□□ 1.29
LSM1O15116 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
LSM1O15116 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
LSM1O15116 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
LSM1O15116 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC23.13■■□□□ 1.29
LSM1O15116 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC23.13■■□□□ 1.29
LSM1O15116 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC23.13■■□□□ 1.29
LSM1O15116 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 120.8 ms