Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC28.3■■■□□ 2.12
CCDC144BQ3MJ40 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
CCDC144BQ3MJ40 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC28.3■■■□□ 2.12
CCDC144BQ3MJ40 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
CCDC144BQ3MJ40 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC28.29■■■□□ 2.12
CCDC144BQ3MJ40 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC28.29■■■□□ 2.12
CCDC144BQ3MJ40 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
CCDC144BQ3MJ40 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
CCDC144BQ3MJ40 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC28.28■■■□□ 2.12
CCDC144BQ3MJ40 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC28.28■■■□□ 2.12
CCDC144BQ3MJ40 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
CCDC144BQ3MJ40 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC28.28■■■□□ 2.12
CCDC144BQ3MJ40 AL449106.1-201ENST00000608517 1980 ntBASIC28.28■■■□□ 2.12
CCDC144BQ3MJ40 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC28.27■■■□□ 2.12
CCDC144BQ3MJ40 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC28.27■■■□□ 2.12
CCDC144BQ3MJ40 AC026202.3-201ENST00000600805 1127 ntBASIC28.27■■■□□ 2.12
CCDC144BQ3MJ40 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC28.27■■■□□ 2.12
CCDC144BQ3MJ40 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC28.27■■■□□ 2.12
CCDC144BQ3MJ40 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC28.27■■■□□ 2.12
CCDC144BQ3MJ40 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
CCDC144BQ3MJ40 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
CCDC144BQ3MJ40 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC28.26■■■□□ 2.12
CCDC144BQ3MJ40 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
CCDC144BQ3MJ40 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC28.26■■■□□ 2.11
CCDC144BQ3MJ40 AC025884.2-201ENST00000553429 711 ntBASIC28.26■■■□□ 2.11
CCDC144BQ3MJ40 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
CCDC144BQ3MJ40 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC28.26■■■□□ 2.11
CCDC144BQ3MJ40 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC28.25■■■□□ 2.11
CCDC144BQ3MJ40 LINC01003-201ENST00000564834 1764 ntBASIC28.25■■■□□ 2.11
CCDC144BQ3MJ40 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC28.25■■■□□ 2.11
CCDC144BQ3MJ40 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC28.25■■■□□ 2.11
CCDC144BQ3MJ40 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC28.24■■■□□ 2.11
CCDC144BQ3MJ40 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
CCDC144BQ3MJ40 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
CCDC144BQ3MJ40 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC28.24■■■□□ 2.11
CCDC144BQ3MJ40 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
CCDC144BQ3MJ40 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
CCDC144BQ3MJ40 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
CCDC144BQ3MJ40 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC28.23■■■□□ 2.11
CCDC144BQ3MJ40 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC28.23■■■□□ 2.11
CCDC144BQ3MJ40 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC28.22■■■□□ 2.11
CCDC144BQ3MJ40 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
CCDC144BQ3MJ40 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC28.22■■■□□ 2.11
CCDC144BQ3MJ40 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC28.22■■■□□ 2.11
CCDC144BQ3MJ40 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC28.22■■■□□ 2.11
CCDC144BQ3MJ40 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC28.21■■■□□ 2.11
CCDC144BQ3MJ40 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
CCDC144BQ3MJ40 HES4-204ENST00000484667 667 ntTSL 3 BASIC28.21■■■□□ 2.11
CCDC144BQ3MJ40 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC28.2■■■□□ 2.1
CCDC144BQ3MJ40 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC28.2■■■□□ 2.1
CCDC144BQ3MJ40 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC28.2■■■□□ 2.1
CCDC144BQ3MJ40 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
CCDC144BQ3MJ40 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC28.19■■■□□ 2.1
CCDC144BQ3MJ40 RP9P-202ENST00000450133 1212 ntBASIC28.19■■■□□ 2.1
CCDC144BQ3MJ40 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
CCDC144BQ3MJ40 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
CCDC144BQ3MJ40 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
CCDC144BQ3MJ40 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC28.18■■■□□ 2.1
CCDC144BQ3MJ40 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
CCDC144BQ3MJ40 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
CCDC144BQ3MJ40 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC28.17■■■□□ 2.1
CCDC144BQ3MJ40 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
CCDC144BQ3MJ40 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC28.17■■■□□ 2.1
CCDC144BQ3MJ40 AC093536.1-201ENST00000569153 554 ntBASIC28.17■■■□□ 2.1
CCDC144BQ3MJ40 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC28.17■■■□□ 2.1
CCDC144BQ3MJ40 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC28.17■■■□□ 2.1
CCDC144BQ3MJ40 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC28.16■■■□□ 2.1
CCDC144BQ3MJ40 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC28.16■■■□□ 2.1
CCDC144BQ3MJ40 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
CCDC144BQ3MJ40 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
CCDC144BQ3MJ40 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC28.15■■■□□ 2.1
CCDC144BQ3MJ40 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
CCDC144BQ3MJ40 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC28.15■■■□□ 2.1
CCDC144BQ3MJ40 DUX4L9-201ENST00000449051 1259 ntBASIC28.15■■■□□ 2.1
CCDC144BQ3MJ40 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC28.15■■■□□ 2.1
CCDC144BQ3MJ40 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC28.15■■■□□ 2.1
CCDC144BQ3MJ40 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
CCDC144BQ3MJ40 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
CCDC144BQ3MJ40 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
CCDC144BQ3MJ40 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC28.14■■■□□ 2.09
CCDC144BQ3MJ40 RAP2CP1-202ENST00000605179 643 ntBASIC28.13■■■□□ 2.09
CCDC144BQ3MJ40 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
CCDC144BQ3MJ40 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC28.13■■■□□ 2.09
CCDC144BQ3MJ40 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
CCDC144BQ3MJ40 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
CCDC144BQ3MJ40 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC28.12■■■□□ 2.09
CCDC144BQ3MJ40 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC28.12■■■□□ 2.09
CCDC144BQ3MJ40 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC28.12■■■□□ 2.09
CCDC144BQ3MJ40 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
CCDC144BQ3MJ40 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC28.12■■■□□ 2.09
CCDC144BQ3MJ40 AP002414.2-202ENST00000590929 1450 ntBASIC28.12■■■□□ 2.09
CCDC144BQ3MJ40 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC28.11■■■□□ 2.09
CCDC144BQ3MJ40 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC28.11■■■□□ 2.09
CCDC144BQ3MJ40 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC28.11■■■□□ 2.09
CCDC144BQ3MJ40 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
CCDC144BQ3MJ40 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC28.11■■■□□ 2.09
CCDC144BQ3MJ40 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC28.11■■■□□ 2.09
CCDC144BQ3MJ40 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
CCDC144BQ3MJ40 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC28.1■■■□□ 2.09
CCDC144BQ3MJ40 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC28.1■■■□□ 2.09
Retrieved 100 of 98,524 protein–RNA pairs in 15.4 ms