Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
CHD9Q3L8U1 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC26.45■■□□□ 1.82
CHD9Q3L8U1 ABCB10P3-201ENST00000561950 2166 ntBASIC26.44■■□□□ 1.82
CHD9Q3L8U1 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC26.44■■□□□ 1.82
CHD9Q3L8U1 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
CHD9Q3L8U1 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC26.44■■□□□ 1.82
CHD9Q3L8U1 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
CHD9Q3L8U1 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC26.43■■□□□ 1.82
CHD9Q3L8U1 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
CHD9Q3L8U1 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC26.43■■□□□ 1.82
CHD9Q3L8U1 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
CHD9Q3L8U1 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
CHD9Q3L8U1 RPS2P7-201ENST00000447334 885 ntBASIC26.41■■□□□ 1.82
CHD9Q3L8U1 AL139246.5-201ENST00000606645 996 ntBASIC26.41■■□□□ 1.82
CHD9Q3L8U1 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC26.41■■□□□ 1.82
CHD9Q3L8U1 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
CHD9Q3L8U1 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
CHD9Q3L8U1 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
CHD9Q3L8U1 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC26.4■■□□□ 1.82
CHD9Q3L8U1 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC26.4■■□□□ 1.82
CHD9Q3L8U1 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
CHD9Q3L8U1 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC26.39■■□□□ 1.82
CHD9Q3L8U1 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
CHD9Q3L8U1 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC26.39■■□□□ 1.82
CHD9Q3L8U1 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC26.39■■□□□ 1.81
CHD9Q3L8U1 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
CHD9Q3L8U1 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC26.39■■□□□ 1.81
CHD9Q3L8U1 LONRF2P2-201ENST00000439212 571 ntBASIC26.38■■□□□ 1.81
CHD9Q3L8U1 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
CHD9Q3L8U1 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC26.38■■□□□ 1.81
CHD9Q3L8U1 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
CHD9Q3L8U1 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
CHD9Q3L8U1 AC022616.5-201ENST00000518796 181 ntBASIC26.37■■□□□ 1.81
CHD9Q3L8U1 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC26.37■■□□□ 1.81
CHD9Q3L8U1 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC26.37■■□□□ 1.81
CHD9Q3L8U1 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC26.36■■□□□ 1.81
CHD9Q3L8U1 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC26.36■■□□□ 1.81
CHD9Q3L8U1 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
CHD9Q3L8U1 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC26.36■■□□□ 1.81
CHD9Q3L8U1 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
CHD9Q3L8U1 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
CHD9Q3L8U1 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
CHD9Q3L8U1 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC26.35■■□□□ 1.81
CHD9Q3L8U1 AC110285.6-201ENST00000617652 491 ntBASIC26.35■■□□□ 1.81
CHD9Q3L8U1 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC26.35■■□□□ 1.81
CHD9Q3L8U1 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
CHD9Q3L8U1 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC26.35■■□□□ 1.81
CHD9Q3L8U1 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
CHD9Q3L8U1 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC26.34■■□□□ 1.81
CHD9Q3L8U1 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
CHD9Q3L8U1 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
CHD9Q3L8U1 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
CHD9Q3L8U1 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC26.34■■□□□ 1.81
CHD9Q3L8U1 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC26.33■■□□□ 1.81
CHD9Q3L8U1 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC26.33■■□□□ 1.81
CHD9Q3L8U1 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CHD9Q3L8U1 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CHD9Q3L8U1 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CHD9Q3L8U1 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CHD9Q3L8U1 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC26.32■■□□□ 1.8
CHD9Q3L8U1 KRT16P3-201ENST00000439127 1283 ntBASIC26.32■■□□□ 1.8
CHD9Q3L8U1 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CHD9Q3L8U1 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC26.31■■□□□ 1.8
CHD9Q3L8U1 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CHD9Q3L8U1 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC26.31■■□□□ 1.8
CHD9Q3L8U1 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC26.31■■□□□ 1.8
CHD9Q3L8U1 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.8
CHD9Q3L8U1 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
CHD9Q3L8U1 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC26.3■■□□□ 1.8
CHD9Q3L8U1 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CHD9Q3L8U1 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
CHD9Q3L8U1 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC26.29■■□□□ 1.8
CHD9Q3L8U1 AL139393.2-201ENST00000608721 2025 ntBASIC26.29■■□□□ 1.8
CHD9Q3L8U1 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC26.29■■□□□ 1.8
CHD9Q3L8U1 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC26.29■■□□□ 1.8
CHD9Q3L8U1 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
CHD9Q3L8U1 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC26.29■■□□□ 1.8
CHD9Q3L8U1 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC26.29■■□□□ 1.8
CHD9Q3L8U1 BX664725.1-201ENST00000438252 379 ntBASIC26.29■■□□□ 1.8
CHD9Q3L8U1 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CHD9Q3L8U1 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CHD9Q3L8U1 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC26.28■■□□□ 1.8
CHD9Q3L8U1 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC26.28■■□□□ 1.8
CHD9Q3L8U1 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC26.27■■□□□ 1.8
CHD9Q3L8U1 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC26.27■■□□□ 1.8
CHD9Q3L8U1 MIR4466-201ENST00000606121 54 ntBASIC26.27■■□□□ 1.8
CHD9Q3L8U1 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
CHD9Q3L8U1 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC26.26■■□□□ 1.79
CHD9Q3L8U1 NALT1-201ENST00000429224 738 ntTSL 5 BASIC26.26■■□□□ 1.79
CHD9Q3L8U1 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CHD9Q3L8U1 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC26.25■■□□□ 1.79
CHD9Q3L8U1 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CHD9Q3L8U1 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC26.25■■□□□ 1.79
CHD9Q3L8U1 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
CHD9Q3L8U1 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CHD9Q3L8U1 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC26.25■■□□□ 1.79
CHD9Q3L8U1 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC26.25■■□□□ 1.79
CHD9Q3L8U1 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CHD9Q3L8U1 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC26.23■■□□□ 1.79
CHD9Q3L8U1 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms