Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC31.47■■■□□ 2.63
COL5A3P25940 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC31.47■■■□□ 2.63
COL5A3P25940 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC31.47■■■□□ 2.63
COL5A3P25940 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC31.47■■■□□ 2.63
COL5A3P25940 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC31.47■■■□□ 2.63
COL5A3P25940 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
COL5A3P25940 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC31.47■■■□□ 2.63
COL5A3P25940 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
COL5A3P25940 RNF146-205ENST00000477776 762 ntTSL 3 BASIC31.46■■■□□ 2.63
COL5A3P25940 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
COL5A3P25940 TK2-216ENST00000564917 1156 ntTSL 3 BASIC31.46■■■□□ 2.63
COL5A3P25940 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC31.45■■■□□ 2.63
COL5A3P25940 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC31.45■■■□□ 2.63
COL5A3P25940 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC31.45■■■□□ 2.63
COL5A3P25940 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC31.45■■■□□ 2.62
COL5A3P25940 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
COL5A3P25940 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC31.44■■■□□ 2.62
COL5A3P25940 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC31.44■■■□□ 2.62
COL5A3P25940 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC31.44■■■□□ 2.62
COL5A3P25940 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
COL5A3P25940 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC31.44■■■□□ 2.62
COL5A3P25940 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC31.43■■■□□ 2.62
COL5A3P25940 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC31.43■■■□□ 2.62
COL5A3P25940 Z92544.1-202ENST00000571933 1220 ntBASIC31.43■■■□□ 2.62
COL5A3P25940 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC31.42■■■□□ 2.62
COL5A3P25940 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
COL5A3P25940 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC31.42■■■□□ 2.62
COL5A3P25940 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC31.42■■■□□ 2.62
COL5A3P25940 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
COL5A3P25940 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC31.41■■■□□ 2.62
COL5A3P25940 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
COL5A3P25940 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
COL5A3P25940 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC31.4■■■□□ 2.62
COL5A3P25940 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
COL5A3P25940 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
COL5A3P25940 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
COL5A3P25940 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC31.39■■■□□ 2.62
COL5A3P25940 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC31.38■■■□□ 2.61
COL5A3P25940 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC31.38■■■□□ 2.61
COL5A3P25940 RPS2P7-201ENST00000447334 885 ntBASIC31.38■■■□□ 2.61
COL5A3P25940 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC31.38■■■□□ 2.61
COL5A3P25940 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC31.37■■■□□ 2.61
COL5A3P25940 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC31.36■■■□□ 2.61
COL5A3P25940 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC31.36■■■□□ 2.61
COL5A3P25940 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
COL5A3P25940 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC31.36■■■□□ 2.61
COL5A3P25940 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC31.35■■■□□ 2.61
COL5A3P25940 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
COL5A3P25940 CREM-229ENST00000474362 1030 ntTSL 2 BASIC31.35■■■□□ 2.61
COL5A3P25940 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC31.35■■■□□ 2.61
COL5A3P25940 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
COL5A3P25940 LSM7-203ENST00000585409 512 ntTSL 2 BASIC31.34■■■□□ 2.61
COL5A3P25940 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
COL5A3P25940 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC31.34■■■□□ 2.61
COL5A3P25940 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC31.33■■■□□ 2.61
COL5A3P25940 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC31.33■■■□□ 2.61
COL5A3P25940 PROC-203ENST00000409048 1586 ntTSL 5 BASIC31.33■■■□□ 2.61
COL5A3P25940 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
COL5A3P25940 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC31.32■■■□□ 2.61
COL5A3P25940 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC31.32■■■□□ 2.61
COL5A3P25940 GRAMD4P7-201ENST00000578182 1232 ntBASIC31.32■■■□□ 2.61
COL5A3P25940 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC31.32■■■□□ 2.6
COL5A3P25940 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC31.32■■■□□ 2.6
COL5A3P25940 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
COL5A3P25940 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC31.32■■■□□ 2.6
COL5A3P25940 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC31.32■■■□□ 2.6
COL5A3P25940 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC31.31■■■□□ 2.6
COL5A3P25940 AC239859.2-201ENST00000444165 318 ntBASIC31.3■■■□□ 2.6
COL5A3P25940 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC31.3■■■□□ 2.6
COL5A3P25940 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC31.3■■■□□ 2.6
COL5A3P25940 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
COL5A3P25940 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC31.29■■■□□ 2.6
COL5A3P25940 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
COL5A3P25940 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
COL5A3P25940 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
COL5A3P25940 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
COL5A3P25940 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
COL5A3P25940 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
COL5A3P25940 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC31.28■■■□□ 2.6
COL5A3P25940 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
COL5A3P25940 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC31.28■■■□□ 2.6
COL5A3P25940 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC31.28■■■□□ 2.6
COL5A3P25940 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC31.28■■■□□ 2.6
COL5A3P25940 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC31.27■■■□□ 2.6
COL5A3P25940 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC31.27■■■□□ 2.6
COL5A3P25940 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
COL5A3P25940 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC31.27■■■□□ 2.6
COL5A3P25940 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC31.27■■■□□ 2.6
COL5A3P25940 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC31.27■■■□□ 2.6
COL5A3P25940 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.6
COL5A3P25940 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
COL5A3P25940 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC31.25■■■□□ 2.59
COL5A3P25940 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC31.25■■■□□ 2.59
COL5A3P25940 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC31.25■■■□□ 2.59
COL5A3P25940 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
COL5A3P25940 LONRF2P2-201ENST00000439212 571 ntBASIC31.24■■■□□ 2.59
COL5A3P25940 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
COL5A3P25940 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC31.24■■■□□ 2.59
COL5A3P25940 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC31.23■■■□□ 2.59
COL5A3P25940 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms