Protein–RNA interactions for Protein: P22362

CCL1, C-C motif chemokine 1, humanhuman

Predictions only

Length 96 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCL1P22362 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC21.06■□□□□ 0.96
CCL1P22362 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCL1P22362 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCL1P22362 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CCL1P22362 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC21.05■□□□□ 0.96
CCL1P22362 MED25-210ENST00000612854 801 ntTSL 5 BASIC21.05■□□□□ 0.96
CCL1P22362 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CCL1P22362 MED25-214ENST00000622402 642 ntTSL 5 BASIC21.05■□□□□ 0.96
CCL1P22362 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC21.05■□□□□ 0.96
CCL1P22362 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCL1P22362 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCL1P22362 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCL1P22362 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCL1P22362 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCL1P22362 AL359504.2-201ENST00000605506 1601 ntBASIC21.04■□□□□ 0.96
CCL1P22362 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC21.04■□□□□ 0.96
CCL1P22362 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
CCL1P22362 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
CCL1P22362 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCL1P22362 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCL1P22362 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCL1P22362 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
CCL1P22362 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CCL1P22362 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC21.02■□□□□ 0.96
CCL1P22362 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC21.02■□□□□ 0.96
CCL1P22362 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC21.02■□□□□ 0.96
CCL1P22362 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCL1P22362 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC21.01■□□□□ 0.95
CCL1P22362 MACF1-219ENST00000484793 834 ntTSL 2 BASIC21.01■□□□□ 0.95
CCL1P22362 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CCL1P22362 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCL1P22362 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
CCL1P22362 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC21■□□□□ 0.95
CCL1P22362 ABHD17AP4-201ENST00000411545 909 ntBASIC21■□□□□ 0.95
CCL1P22362 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC21■□□□□ 0.95
CCL1P22362 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC21■□□□□ 0.95
CCL1P22362 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCL1P22362 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCL1P22362 CEBPA-AS1-201ENST00000592982 2198 ntBASIC21■□□□□ 0.95
CCL1P22362 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCL1P22362 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
CCL1P22362 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
CCL1P22362 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCL1P22362 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCL1P22362 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
CCL1P22362 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCL1P22362 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCL1P22362 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCL1P22362 MIR3648-2-201ENST00000581792 180 ntBASIC20.98■□□□□ 0.95
CCL1P22362 MIR3648-1-201ENST00000615959 180 ntBASIC20.98■□□□□ 0.95
CCL1P22362 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCL1P22362 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCL1P22362 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCL1P22362 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC20.97■□□□□ 0.95
CCL1P22362 AC096887.2-201ENST00000623443 1957 ntBASIC20.97■□□□□ 0.95
CCL1P22362 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC20.97■□□□□ 0.95
CCL1P22362 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
CCL1P22362 AC126177.7-201ENST00000547904 679 ntBASIC20.97■□□□□ 0.95
CCL1P22362 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
CCL1P22362 GDI1-215ENST00000630693 786 ntTSL 4 BASIC20.97■□□□□ 0.95
CCL1P22362 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
CCL1P22362 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
CCL1P22362 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCL1P22362 SNAI3-AS1-204ENST00000567997 2048 ntBASIC20.97■□□□□ 0.95
CCL1P22362 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCL1P22362 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
CCL1P22362 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCL1P22362 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCL1P22362 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCL1P22362 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
CCL1P22362 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC20.96■□□□□ 0.95
CCL1P22362 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC20.95■□□□□ 0.94
CCL1P22362 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCL1P22362 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CCL1P22362 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCL1P22362 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CCL1P22362 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC20.95■□□□□ 0.94
CCL1P22362 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
CCL1P22362 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
CCL1P22362 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CCL1P22362 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CCL1P22362 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCL1P22362 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
CCL1P22362 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCL1P22362 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC20.93■□□□□ 0.94
CCL1P22362 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC20.93■□□□□ 0.94
CCL1P22362 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC20.93■□□□□ 0.94
CCL1P22362 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CCL1P22362 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCL1P22362 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
CCL1P22362 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CCL1P22362 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CCL1P22362 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
CCL1P22362 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCL1P22362 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC20.92■□□□□ 0.94
CCL1P22362 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCL1P22362 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCL1P22362 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
CCL1P22362 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC20.92■□□□□ 0.94
CCL1P22362 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC20.91■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 77.9 ms