Protein–RNA interactions for Protein: P04155

TFF1, Trefoil factor 1, humanhuman

Predictions only

Length 84 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF1P04155 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TFF1P04155 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
TFF1P04155 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
TFF1P04155 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC20.49■□□□□ 0.87
TFF1P04155 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TFF1P04155 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
TFF1P04155 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TFF1P04155 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TFF1P04155 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC20.48■□□□□ 0.87
TFF1P04155 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TFF1P04155 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC20.47■□□□□ 0.87
TFF1P04155 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
TFF1P04155 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TFF1P04155 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TFF1P04155 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC20.46■□□□□ 0.87
TFF1P04155 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TFF1P04155 AC091060.1-201ENST00000623524 1766 ntBASIC20.46■□□□□ 0.87
TFF1P04155 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC20.46■□□□□ 0.87
TFF1P04155 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TFF1P04155 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TFF1P04155 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC20.46■□□□□ 0.87
TFF1P04155 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TFF1P04155 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TFF1P04155 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TFF1P04155 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC20.45■□□□□ 0.86
TFF1P04155 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TFF1P04155 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC20.45■□□□□ 0.86
TFF1P04155 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC20.44■□□□□ 0.86
TFF1P04155 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC20.44■□□□□ 0.86
TFF1P04155 HSD17B1P1-201ENST00000590052 955 ntBASIC20.44■□□□□ 0.86
TFF1P04155 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
TFF1P04155 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
TFF1P04155 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC20.43■□□□□ 0.86
TFF1P04155 ERN1-208ENST00000606895 2068 ntBASIC20.43■□□□□ 0.86
TFF1P04155 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
TFF1P04155 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TFF1P04155 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
TFF1P04155 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC20.43■□□□□ 0.86
TFF1P04155 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
TFF1P04155 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TFF1P04155 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
TFF1P04155 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC20.42■□□□□ 0.86
TFF1P04155 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC20.42■□□□□ 0.86
TFF1P04155 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC20.42■□□□□ 0.86
TFF1P04155 SMPD5-203ENST00000639008 1464 ntBASIC20.42■□□□□ 0.86
TFF1P04155 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TFF1P04155 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TFF1P04155 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TFF1P04155 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TFF1P04155 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC20.41■□□□□ 0.86
TFF1P04155 AC025884.2-201ENST00000553429 711 ntBASIC20.41■□□□□ 0.86
TFF1P04155 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC20.41■□□□□ 0.86
TFF1P04155 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TFF1P04155 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TFF1P04155 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC20.41■□□□□ 0.86
TFF1P04155 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
TFF1P04155 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
TFF1P04155 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
TFF1P04155 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TFF1P04155 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC20.4■□□□□ 0.86
TFF1P04155 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
TFF1P04155 ECEL1P2-201ENST00000461596 1295 ntBASIC20.4■□□□□ 0.86
TFF1P04155 AC092803.2-201ENST00000564287 1899 ntBASIC20.4■□□□□ 0.86
TFF1P04155 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
TFF1P04155 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
TFF1P04155 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TFF1P04155 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC20.39■□□□□ 0.85
TFF1P04155 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
TFF1P04155 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC20.39■□□□□ 0.85
TFF1P04155 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TFF1P04155 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
TFF1P04155 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
TFF1P04155 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC20.38■□□□□ 0.85
TFF1P04155 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC20.38■□□□□ 0.85
TFF1P04155 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC20.38■□□□□ 0.85
TFF1P04155 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TFF1P04155 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC20.37■□□□□ 0.85
TFF1P04155 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC20.37■□□□□ 0.85
TFF1P04155 CREM-210ENST00000374721 2020 ntTSL 5 BASIC20.37■□□□□ 0.85
TFF1P04155 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC20.37■□□□□ 0.85
TFF1P04155 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC20.37■□□□□ 0.85
TFF1P04155 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
TFF1P04155 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
TFF1P04155 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TFF1P04155 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TFF1P04155 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
TFF1P04155 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
TFF1P04155 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC20.36■□□□□ 0.85
TFF1P04155 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TFF1P04155 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TFF1P04155 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TFF1P04155 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC20.36■□□□□ 0.85
TFF1P04155 SHF-207ENST00000560540 2062 ntTSL 5 BASIC20.36■□□□□ 0.85
TFF1P04155 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TFF1P04155 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TFF1P04155 RNF126P1-201ENST00000567452 1320 ntBASIC20.35■□□□□ 0.85
TFF1P04155 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TFF1P04155 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TFF1P04155 BRD4-212ENST00000630599 726 ntTSL 2 BASIC20.35■□□□□ 0.85
TFF1P04155 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms