Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 GGA3-210ENST00000580799 521 ntTSL 59.31□□□□□ -0.921e-6■■■■■ 28.6
SMNDC1O75940 GGA3-223ENST00000621870 4034 ntTSL 1 (best)9.17□□□□□ -0.941e-6■■■■■ 28.6
SMNDC1O75940 GGA3-222ENST00000621217 4181 ntTSL 29.16□□□□□ -0.941e-6■■■■■ 28.6
SMNDC1O75940 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC9.07□□□□□ -0.961e-6■■■■■ 28.6
SMNDC1O75940 LRRC75A-AS1-222ENST00000580770 572 ntTSL 48.94□□□□□ -0.982e-24■■■■■ 28.6
SMNDC1O75940 LRRC75A-AS1-204ENST00000475947 598 ntTSL 28.94□□□□□ -0.982e-24■■■■■ 28.6
SMNDC1O75940 LRRC75A-AS1-201ENST00000460249 773 ntTSL 38.94□□□□□ -0.982e-24■■■■■ 28.6
SMNDC1O75940 CENPK-205ENST00000505960 834 ntTSL 58.93□□□□□ -0.981e-6■■■■■ 28.6
SMNDC1O75940 GGA3-202ENST00000538886 3766 ntTSL 1 (best) BASIC8.9□□□□□ -0.981e-6■■■■■ 28.6
SMNDC1O75940 LRRC75A-AS1-227ENST00000583400 712 ntTSL 48.87□□□□□ -0.992e-24■■■■■ 28.6
SMNDC1O75940 LRRC75A-AS1-223ENST00000581361 843 ntTSL 1 (best) BASIC8.84□□□□□ -0.992e-24■■■■■ 28.6
SMNDC1O75940 KAT2A-204ENST00000588759 404 ntTSL 58.68□□□□□ -1.021e-6■■■■■ 28.6
SMNDC1O75940 RPE-216ENST00000454822 2130 ntTSL 2 BASIC8.57□□□□□ -1.041e-6■■■■■ 28.6
SMNDC1O75940 RPE-212ENST00000441588 496 ntTSL 48.32□□□□□ -1.081e-6■■■■■ 28.6
SMNDC1O75940 RPE-210ENST00000438204 796 ntTSL 2 BASIC8.32□□□□□ -1.081e-6■■■■■ 28.6
SMNDC1O75940 RPE-213ENST00000445268 668 ntTSL 5 BASIC8.32□□□□□ -1.081e-6■■■■■ 28.6
SMNDC1O75940 RPE-209ENST00000438191 426 ntTSL 58.26□□□□□ -1.091e-6■■■■■ 28.6
SMNDC1O75940 GGA3-207ENST00000578896 439 ntTSL 58.09□□□□□ -1.111e-6■■■■■ 28.6
SMNDC1O75940 CENPK-212ENST00000510768 725 ntTSL 58.07□□□□□ -1.121e-6■■■■■ 28.6
SMNDC1O75940 ZFAS1-204ENST00000428008 566 ntTSL 28.01□□□□□ -1.133e-12■■■■■ 28.6
SMNDC1O75940 LRRC75A-AS1-221ENST00000580180 753 ntTSL 28.01□□□□□ -1.132e-24■■■■■ 28.6
SMNDC1O75940 ZFAS1-209ENST00000620594 508 ntTSL 37.92□□□□□ -1.143e-12■■■■■ 28.6
SMNDC1O75940 RPE-207ENST00000435437 858 ntTSL 2 BASIC7.85□□□□□ -1.151e-6■■■■■ 28.6
SMNDC1O75940 LRRC75A-AS1-216ENST00000492250 565 ntTSL 57.83□□□□□ -1.162e-24■■■■■ 28.6
SMNDC1O75940 CENPK-208ENST00000508421 1586 ntTSL 3 BASIC7.81□□□□□ -1.161e-6■■■■■ 28.6
SMNDC1O75940 RPE-203ENST00000408981 737 ntTSL 57.55□□□□□ -1.21e-6■■■■■ 28.6
SMNDC1O75940 RPE-211ENST00000438265 668 ntTSL 37.33□□□□□ -1.241e-6■■■■■ 28.6
SMNDC1O75940 RPE-204ENST00000411934 792 ntTSL 1 (best) BASIC7.3□□□□□ -1.241e-6■■■■■ 28.6
SMNDC1O75940 HELLS-206ENST00000394045 2699 ntTSL 1 (best) BASIC7.25□□□□□ -1.251e-6■■■■■ 28.6
SMNDC1O75940 LRRC75A-AS1-220ENST00000579473 585 ntTSL 4 BASIC7.13□□□□□ -1.272e-24■■■■■ 28.6
SMNDC1O75940 RPE-205ENST00000429907 925 ntTSL 2 BASIC7.07□□□□□ -1.281e-6■■■■■ 28.6
SMNDC1O75940 LRRC75A-AS1-230ENST00000584926 604 ntTSL 56.82□□□□□ -1.322e-24■■■■■ 28.6
SMNDC1O75940 LRRC75A-AS1-210ENST00000481898 993 ntTSL 1 (best)6.67□□□□□ -1.342e-24■■■■■ 28.6
SMNDC1O75940 ZFAS1-201ENST00000326677 504 ntTSL 1 (best)6.6□□□□□ -1.353e-12■■■■■ 28.6
SMNDC1O75940 HELLS-208ENST00000462057 778 ntTSL 36.38□□□□□ -1.391e-6■■■■■ 28.6
SMNDC1O75940 LRRC75A-AS1-211ENST00000483140 936 ntTSL 26.3□□□□□ -1.42e-24■■■■■ 28.6
SMNDC1O75940 HELLS-205ENST00000394036 3131 ntTSL 1 (best) BASIC5.98□□□□□ -1.451e-6■■■■■ 28.6
SMNDC1O75940 RPE-215ENST00000453724 546 ntTSL 55.53□□□□□ -1.521e-6■■■■■ 28.6
SMNDC1O75940 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC4.93□□□□□ -1.621e-6■■■■■ 28.6
SMNDC1O75940 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC4.28□□□□□ -1.721e-6■■■■■ 28.6
SMNDC1O75940 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC16.23■□□□□ 0.192e-9■■■■■ 28.5
SMNDC1O75940 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.921e-6■■■■■ 28.5
SMNDC1O75940 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC19.19■□□□□ 0.661e-6■■■■■ 28.4
SMNDC1O75940 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC18.36■□□□□ 0.531e-6■■■■■ 28.4
SMNDC1O75940 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC17.74■□□□□ 0.431e-6■■■■■ 28.4
SMNDC1O75940 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.411e-6■■■■■ 28.4
SMNDC1O75940 MAEA-212ENST00000509531 1001 ntTSL 1 (best)17.46■□□□□ 0.391e-6■■■■■ 28.4
SMNDC1O75940 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC17.35■□□□□ 0.371e-6■■■■■ 28.4
SMNDC1O75940 MAEA-203ENST00000502558 570 ntTSL 215.05■□□□□ -01e-6■■■■■ 28.4
SMNDC1O75940 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC12.37□□□□□ -0.431e-6■■■■■ 28.4
SMNDC1O75940 MAEA-205ENST00000503653 845 ntTSL 311.49□□□□□ -0.571e-6■■■■■ 28.4
SMNDC1O75940 BAX-207ENST00000502487 1346 ntTSL 1 (best)23.75■■□□□ 1.395e-6■■■■■ 28.4
SMNDC1O75940 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.195e-6■■■■■ 28.4
SMNDC1O75940 BAX-211ENST00000513545 775 ntTSL 319.66■□□□□ 0.745e-6■■■■■ 28.4
SMNDC1O75940 BAX-209ENST00000506183 383 ntTSL 1 (best)15.45■□□□□ 0.065e-6■■■■■ 28.4
SMNDC1O75940 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC15.45■□□□□ 0.065e-6■■■■■ 28.4
SMNDC1O75940 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC15.01□□□□□ -0.015e-6■■■■■ 28.4
SMNDC1O75940 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC14.57□□□□□ -0.085e-6■■■■■ 28.4
SMNDC1O75940 BAX-204ENST00000356483 677 ntTSL 1 (best)14.57□□□□□ -0.085e-6■■■■■ 28.4
SMNDC1O75940 BAX-208ENST00000503726 488 ntTSL 214.41□□□□□ -0.15e-6■■■■■ 28.4
SMNDC1O75940 BAX-212ENST00000515540 300 ntTSL 313.6□□□□□ -0.235e-6■■■■■ 28.4
SMNDC1O75940 MTA1-215ENST00000494981 509 ntTSL 313.44□□□□□ -0.264e-10■■■■■ 28.4
SMNDC1O75940 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC13.15□□□□□ -0.35e-6■■■■■ 28.4
SMNDC1O75940 BAX-205ENST00000391871 687 ntTSL 5 BASIC12.57□□□□□ -0.45e-6■■■■■ 28.4
SMNDC1O75940 CDK16-217ENST00000522234 1679 ntTSL 219.38■□□□□ 0.692e-7■■■■■ 28.4
SMNDC1O75940 SMTN-224ENST00000624247 1263 ntTSL 519.14■□□□□ 0.652e-7■■■■■ 28.4
SMNDC1O75940 ILF3-215ENST00000589485 620 ntTSL 218.59■□□□□ 0.572e-7■■■■■ 28.4
SMNDC1O75940 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC18.48■□□□□ 0.552e-7■■■■■ 28.4
SMNDC1O75940 SMTN-212ENST00000455608 648 ntTSL 318.45■□□□□ 0.542e-7■■■■■ 28.4
SMNDC1O75940 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.52e-7■■■■■ 28.4
SMNDC1O75940 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.432e-7■■■■■ 28.4
SMNDC1O75940 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC17.51■□□□□ 0.392e-7■■■■■ 28.4
SMNDC1O75940 TSPAN32-205ENST00000437313 734 ntTSL 517.25■□□□□ 0.352e-7■■■■■ 28.4
SMNDC1O75940 CDK16-208ENST00000517426 1574 ntTSL 517.11■□□□□ 0.332e-7■■■■■ 28.4
SMNDC1O75940 INCENP-204ENST00000528375 808 ntTSL 315.77■□□□□ 0.122e-7■■■■■ 28.4
SMNDC1O75940 SMTN-219ENST00000493335 2937 ntTSL 215.74■□□□□ 0.112e-7■■■■■ 28.4
SMNDC1O75940 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC15.48■□□□□ 0.072e-7■■■■■ 28.4
SMNDC1O75940 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.072e-7■■■■■ 28.4
SMNDC1O75940 EGR2-201ENST00000242480 2968 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.032e-7■■■■■ 28.4
SMNDC1O75940 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC15.22■□□□□ 0.032e-7■■■■■ 28.4
SMNDC1O75940 SMTN-201ENST00000333137 3295 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.012e-7■■■■■ 28.4
SMNDC1O75940 EGR2-202ENST00000411732 2824 ntTSL 2 BASIC15.06■□□□□ 02e-7■■■■■ 28.4
SMNDC1O75940 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.062e-7■■■■■ 28.4
SMNDC1O75940 SMTN-203ENST00000358743 3198 ntAPPRIS P4 TSL 2 BASIC14.64□□□□□ -0.072e-7■■■■■ 28.4
SMNDC1O75940 CDK16-222ENST00000523699 675 ntTSL 514.19□□□□□ -0.142e-7■■■■■ 28.4
SMNDC1O75940 SMTN-213ENST00000460658 5080 ntTSL 514.12□□□□□ -0.152e-7■■■■■ 28.4
SMNDC1O75940 ILF3-207ENST00000587840 655 ntTSL 513.97□□□□□ -0.172e-7■■■■■ 28.4
SMNDC1O75940 ILF3-206ENST00000587505 791 ntTSL 513.78□□□□□ -0.22e-7■■■■■ 28.4
SMNDC1O75940 ILF3-214ENST00000589416 773 ntTSL 413.62□□□□□ -0.232e-7■■■■■ 28.4
SMNDC1O75940 SMTN-222ENST00000612341 3321 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.32e-7■■■■■ 28.4
SMNDC1O75940 HNRNPF-202ENST00000356053 2670 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.32e-7■■■■■ 28.4
SMNDC1O75940 CDK16-203ENST00000428400 3016 ntTSL 213.02□□□□□ -0.332e-7■■■■■ 28.4
SMNDC1O75940 FADS2-215ENST00000574708 385 ntTSL 3 BASIC12.94□□□□□ -0.342e-7■■■■■ 28.4
SMNDC1O75940 CDK16-201ENST00000276052 3016 ntTSL 2 BASIC12.89□□□□□ -0.352e-7■■■■■ 28.4
SMNDC1O75940 ILF3-212ENST00000589173 570 ntTSL 512.78□□□□□ -0.362e-7■■■■■ 28.4
SMNDC1O75940 SMTN-218ENST00000489337 3560 ntTSL 212.7□□□□□ -0.382e-7■■■■■ 28.4
SMNDC1O75940 ILF3-218ENST00000590009 953 ntTSL 512.12□□□□□ -0.472e-7■■■■■ 28.4
SMNDC1O75940 CDK16-204ENST00000457458 3158 ntTSL 1 (best) BASIC12.03□□□□□ -0.482e-7■■■■■ 28.4
SMNDC1O75940 EGR2-206ENST00000639815 1075 ntTSL 511.77□□□□□ -0.532e-7■■■■■ 28.4
SMNDC1O75940 CDK16-220ENST00000523344 1266 ntTSL 510.52□□□□□ -0.732e-7■■■■■ 28.4
Retrieved 100 of 11,362 protein–RNA pairs in 148.7 ms