RNA–Protein interactions for RNA: ENST00000619644.4

SMTN-223, Transcript of smoothelin, humanhuman

TSL 2 BASIC

Gene SMTN, Length 3,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMTN-223ENST00000619644 NISCHQ9Y2I1 1504 aa28.78■■■□□ 2.2
SMTN-223ENST00000619644 SHROOM4Q9ULL8 1493 aa25.39■■□□□ 1.66
SMTN-223ENST00000619644 SUPT5HO00267 1087 aaKnown RBP25.04■■□□□ 1.6
SMTN-223ENST00000619644 DCAF8L2P0C7V8 631 aa24.74■■□□□ 1.55
SMTN-223ENST00000619644 ZCCHC6Q5VYS8 1495 aaKnown RBP24.3■■□□□ 1.48
SMTN-223ENST00000619644 CCDC180Q9P1Z9 1646 aa24.09■■□□□ 1.45
SMTN-223ENST00000619644 CHIC1Q5VXU3 224 aa24.09■■□□□ 1.45
SMTN-223ENST00000619644 HRCP23327 699 aa24.04■■□□□ 1.44
SMTN-223ENST00000619644 MYO15BQ96JP2 1530 aa23.95■■□□□ 1.43
SMTN-223ENST00000619644 PCGF6Q9BYE7 350 aa23.85■■□□□ 1.41
SMTN-223ENST00000619644 LOC105371045A0A1W2PR82 267 aa23.64■■□□□ 1.38
SMTN-223ENST00000619644 PPARGC1BQ86YN6 1023 aaKnown RBP23.53■■□□□ 1.36
SMTN-223ENST00000619644 DCAF1Q9Y4B6 1507 aa23.3■■□□□ 1.32
SMTN-223ENST00000619644 EHMT2Q96KQ7 1210 aa23.3■■□□□ 1.32
SMTN-223ENST00000619644 FAM9AQ8IZU1 332 aaPredicted RBP23.25■■□□□ 1.31
SMTN-223ENST00000619644 TRIM41Q8WV44 630 aa23.14■■□□□ 1.29
SMTN-223ENST00000619644 SCRIBQ14160 1630 aa23.11■■□□□ 1.29
SMTN-223ENST00000619644 TRIM26Q12899 539 aaPredicted RBP23.08■■□□□ 1.29
SMTN-223ENST00000619644 RSF1Q96T23 1441 aaPredicted RBP22.97■■□□□ 1.27
SMTN-223ENST00000619644 ABCC9O60706 1549 aa22.96■■□□□ 1.27
SMTN-223ENST00000619644 PELP1Q8IZL8 1130 aaKnown RBP22.95■■□□□ 1.26
SMTN-223ENST00000619644 RB1CC1Q8TDY2 1594 aa22.78■■□□□ 1.24
SMTN-223ENST00000619644 ZEB1P37275 1124 aaPredicted RBP22.66■■□□□ 1.22
SMTN-223ENST00000619644 CECR2Q9BXF3 1484 aa22.65■■□□□ 1.22
SMTN-223ENST00000619644 SCAF1Q9H7N4 1312 aaKnown RBP22.65■■□□□ 1.22
SMTN-223ENST00000619644 TTBK1Q5TCY1 1321 aaPredicted RBP22.55■■□□□ 1.2
SMTN-223ENST00000619644 MROH2BQ7Z745 1585 aa22.51■■□□□ 1.19
SMTN-223ENST00000619644 WIZO95785 1651 aa22.4■■□□□ 1.18
SMTN-223ENST00000619644 NACADO15069 1562 aa22.38■■□□□ 1.17
SMTN-223ENST00000619644 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.38■■□□□ 1.17
SMTN-223ENST00000619644 CCER1Q8TC90 406 aaPredicted RBP22.33■■□□□ 1.17
SMTN-223ENST00000619644 ACIN1Q9UKV3 1341 aaKnown RBP22.14■■□□□ 1.14
SMTN-223ENST00000619644 UBTFP17480 764 aaKnown RBP22.14■■□□□ 1.13
SMTN-223ENST00000619644 ABCC8Q09428 1581 aa22.11■■□□□ 1.13
SMTN-223ENST00000619644 NEUROD1Q13562 356 aa22.08■■□□□ 1.13
SMTN-223ENST00000619644 BAZ1AQ9NRL2 1556 aaPredicted RBP22.08■■□□□ 1.13
SMTN-223ENST00000619644 PABPN1Q86U42 306 aaKnown RBP eCLIP22.07■■□□□ 1.123e-10■■■■□ 19.6
SMTN-223ENST00000619644 CCDC88BA6NC98 1476 aa22.04■■□□□ 1.12
SMTN-223ENST00000619644 MYT1Q01538 1121 aa22■■□□□ 1.11
SMTN-223ENST00000619644 SOGA1O94964 1423 aa21.97■■□□□ 1.11
SMTN-223ENST00000619644 RANGAP1P46060 587 aaPredicted RBP21.96■■□□□ 1.11
SMTN-223ENST00000619644 GTF3C3Q9Y5Q9 886 aa21.95■■□□□ 1.1
SMTN-223ENST00000619644 CEP162Q5TB80 1403 aa21.92■■□□□ 1.1
SMTN-223ENST00000619644 CSRNP3Q8WYN3 585 aa21.92■■□□□ 1.1
SMTN-223ENST00000619644 DIEXFQ68CQ4 756 aaKnown RBP21.89■■□□□ 1.1
SMTN-223ENST00000619644 TOP2AP11388 1531 aaKnown RBP21.89■■□□□ 1.1
SMTN-223ENST00000619644 CENPBP07199 599 aaPredicted RBP21.88■■□□□ 1.09
SMTN-223ENST00000619644 SMARCA4P51532 1647 aa21.86■■□□□ 1.09
SMTN-223ENST00000619644 RUSC2Q8N2Y8 1516 aa21.85■■□□□ 1.09
SMTN-223ENST00000619644 EIF4G1Q04637 1599 aaKnown RBP21.84■■□□□ 1.09
SMTN-223ENST00000619644 SMARCA2P51531 1590 aa21.82■■□□□ 1.08
SMTN-223ENST00000619644 HNRNPUL2Q1KMD3 747 aaKnown RBP21.82■■□□□ 1.08
SMTN-223ENST00000619644 TNIKQ9UKE5 1360 aa21.76■■□□□ 1.07
SMTN-223ENST00000619644 YTHDC1Q96MU7 727 aaKnown RBP21.7■■□□□ 1.06
SMTN-223ENST00000619644 WRNQ14191 1432 aaPredicted RBP eCLIP21.69■■□□□ 1.06
SMTN-223ENST00000619644 APLP2Q06481 763 aa21.68■■□□□ 1.06
SMTN-223ENST00000619644 UNC13AQ9UPW8 1703 aa21.64■■□□□ 1.06
SMTN-223ENST00000619644 GOLGA3Q08378 1498 aa21.63■■□□□ 1.05
SMTN-223ENST00000619644 EEA1Q15075 1411 aa21.61■■□□□ 1.05
SMTN-223ENST00000619644 ZNF316A6NFI3 1004 aaPredicted RBP21.58■■□□□ 1.05
SMTN-223ENST00000619644 CLIP1P30622 1438 aa21.51■■□□□ 1.03
SMTN-223ENST00000619644 CEP164Q9UPV0 1460 aa21.45■■□□□ 1.03
SMTN-223ENST00000619644 SYNJ1O43426 1573 aa21.43■■□□□ 1.02
SMTN-223ENST00000619644 BICRAQ9NZM4 1560 aa21.4■■□□□ 1.02
SMTN-223ENST00000619644 BAZ1BQ9UIG0 1483 aaKnown RBP21.39■■□□□ 1.02
SMTN-223ENST00000619644 MIER1Q8N108 512 aa21.39■■□□□ 1.02
SMTN-223ENST00000619644 RAPGEF2Q9Y4G8 1499 aa21.37■■□□□ 1.01
SMTN-223ENST00000619644 ATAD2BQ9ULI0 1458 aa21.34■■□□□ 1.01
SMTN-223ENST00000619644 VPS8Q8N3P4 1428 aa21.32■■□□□ 1
SMTN-223ENST00000619644 ITGAEP38570 1179 aa21.3■■□□□ 1
SMTN-223ENST00000619644 KIF21BO75037 1637 aa21.24■□□□□ 0.99
SMTN-223ENST00000619644 PEG3Q9GZU2 1588 aa21.19■□□□□ 0.98
SMTN-223ENST00000619644 KANK4Q5T7N3 995 aaPredicted RBP21.18■□□□□ 0.98
SMTN-223ENST00000619644 ATP1B4Q9UN42 357 aaPredicted RBP21.06■□□□□ 0.96
SMTN-223ENST00000619644 TOP2BQ02880 1626 aa21.03■□□□□ 0.96
SMTN-223ENST00000619644 DHX57Q6P158 1386 aaKnown RBP21■□□□□ 0.95
SMTN-223ENST00000619644 ARAP1Q96P48 1450 aa20.97■□□□□ 0.95
SMTN-223ENST00000619644 KIF27Q86VH2 1401 aa20.97■□□□□ 0.95
SMTN-223ENST00000619644 P3H3Q8IVL6 736 aa20.95■□□□□ 0.94
SMTN-223ENST00000619644 SUPT16HQ9Y5B9 1047 aaKnown RBP20.94■□□□□ 0.94
SMTN-223ENST00000619644 PRXQ9BXM0 1461 aa20.94■□□□□ 0.94
SMTN-223ENST00000619644 CLSPNQ9HAW4 1339 aa20.92■□□□□ 0.94
SMTN-223ENST00000619644 CUX1P39880 1505 aa20.9■□□□□ 0.94
SMTN-223ENST00000619644 FAM50AQ14320 339 aaKnown RBP20.89■□□□□ 0.94
SMTN-223ENST00000619644 CCNB3Q8WWL7 1395 aa20.87■□□□□ 0.93
SMTN-223ENST00000619644 ERICH3Q5RHP9 1530 aa20.86■□□□□ 0.93
SMTN-223ENST00000619644 BIVM-ERCC5R4GMW8 1640 aa20.85■□□□□ 0.93
SMTN-223ENST00000619644 CUX2O14529 1486 aa20.81■□□□□ 0.92
SMTN-223ENST00000619644 TSHZ2Q9NRE2 1034 aa20.8■□□□□ 0.92
SMTN-223ENST00000619644 ARHGAP35Q9NRY4 1499 aa20.79■□□□□ 0.92
SMTN-223ENST00000619644 NCAPD3P42695 1498 aa20.78■□□□□ 0.92
SMTN-223ENST00000619644 ANP32EQ9BTT0 268 aa20.78■□□□□ 0.92
SMTN-223ENST00000619644 RRBP1Q9P2E9 1410 aaKnown RBP20.75■□□□□ 0.91
SMTN-223ENST00000619644 RAB3GAP2Q9H2M9 1393 aa20.75■□□□□ 0.91
SMTN-223ENST00000619644 KCNH8Q96L42 1107 aa20.74■□□□□ 0.91
SMTN-223ENST00000619644 SIN3AQ96ST3 1273 aa20.74■□□□□ 0.91
SMTN-223ENST00000619644 HIRIP3Q9BW71 556 aaPredicted RBP20.74■□□□□ 0.91
SMTN-223ENST00000619644 CFTRP13569 1480 aa20.72■□□□□ 0.91
SMTN-223ENST00000619644 IGF1RP08069 1367 aa20.71■□□□□ 0.91
SMTN-223ENST00000619644 CARMIL1Q5VZK9 1371 aa20.71■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms