RNA–Protein interactions for RNA: ENST00000438204.6

RPE-210, Transcript of ribulose-5-phosphate-3-epimerase, humanhuman

TSL 2 BASIC

Gene RPE, Length 796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPE-210ENST00000438204 NISCHQ9Y2I1 1504 aa24.1■■□□□ 1.45
RPE-210ENST00000438204 ABCC9O60706 1549 aa22.77■■□□□ 1.24
RPE-210ENST00000438204 CCDC180Q9P1Z9 1646 aa22.02■■□□□ 1.11
RPE-210ENST00000438204 DNAJC5BQ9UF47 199 aa22■■□□□ 1.11
RPE-210ENST00000438204 RB1CC1Q8TDY2 1594 aa21.28■■□□□ 1
RPE-210ENST00000438204 PABPN1Q86U42 306 aaKnown RBP eCLIP21.02■□□□□ 0.96
RPE-210ENST00000438204 UNC13AQ9UPW8 1703 aa20.98■□□□□ 0.95
RPE-210ENST00000438204 NACADO15069 1562 aa20.92■□□□□ 0.94
RPE-210ENST00000438204 BICRAQ9NZM4 1560 aa20.77■□□□□ 0.92
RPE-210ENST00000438204 DNAJC5Q9H3Z4 198 aa20.67■□□□□ 0.9
RPE-210ENST00000438204 DCAF8L2P0C7V8 631 aa20.61■□□□□ 0.89
RPE-210ENST00000438204 CC2D2AQ9P2K1 1620 aa20.55■□□□□ 0.88
RPE-210ENST00000438204 CECR2Q9BXF3 1484 aa20.55■□□□□ 0.88
RPE-210ENST00000438204 MYO15BQ96JP2 1530 aa20.32■□□□□ 0.84
RPE-210ENST00000438204 EIF4G1Q04637 1599 aaKnown RBP20.29■□□□□ 0.84
RPE-210ENST00000438204 SHROOM4Q9ULL8 1493 aa20.26■□□□□ 0.83
RPE-210ENST00000438204 SCRIBQ14160 1630 aa20.09■□□□□ 0.81
RPE-210ENST00000438204 CUX2O14529 1486 aa19.86■□□□□ 0.77
RPE-210ENST00000438204 ZCCHC6Q5VYS8 1495 aaKnown RBP19.85■□□□□ 0.77
RPE-210ENST00000438204 DCAF1Q9Y4B6 1507 aa19.81■□□□□ 0.76
RPE-210ENST00000438204 ERCC6Q03468 1493 aa19.67■□□□□ 0.74
RPE-210ENST00000438204 TRIM41Q8WV44 630 aa19.54■□□□□ 0.72
RPE-210ENST00000438204 NESP48681 1621 aa19.37■□□□□ 0.69
RPE-210ENST00000438204 THOC2Q8NI27 1593 aaKnown RBP19.36■□□□□ 0.69
RPE-210ENST00000438204 NCAPD3P42695 1498 aa19.28■□□□□ 0.68
RPE-210ENST00000438204 SMARCA2P51531 1590 aa19.21■□□□□ 0.67
RPE-210ENST00000438204 ATAD2BQ9ULI0 1458 aa19.17■□□□□ 0.66
RPE-210ENST00000438204 KIF21AQ7Z4S6 1674 aa19.16■□□□□ 0.66
RPE-210ENST00000438204 HMGXB3Q12766 1538 aa19.15■□□□□ 0.66
RPE-210ENST00000438204 LAMC3Q9Y6N6 1575 aa19.03■□□□□ 0.64
RPE-210ENST00000438204 SMARCA4P51532 1647 aa19.03■□□□□ 0.64
RPE-210ENST00000438204 BAZ1AQ9NRL2 1556 aaPredicted RBP18.99■□□□□ 0.63
RPE-210ENST00000438204 BAZ1BQ9UIG0 1483 aaKnown RBP18.97■□□□□ 0.63
RPE-210ENST00000438204 PDS5BQ9NTI5 1447 aa18.88■□□□□ 0.61
RPE-210ENST00000438204 WDR62O43379 1518 aa18.85■□□□□ 0.61
RPE-210ENST00000438204 MRC2Q9UBG0 1479 aa18.85■□□□□ 0.61
RPE-210ENST00000438204 AEBP2Q6ZN18 517 aaPredicted RBP18.82■□□□□ 0.6
RPE-210ENST00000438204 PEG3Q9GZU2 1588 aa18.79■□□□□ 0.6
RPE-210ENST00000438204 RIMBP3CA6NJZ7 1639 aa18.78■□□□□ 0.6
RPE-210ENST00000438204 RIMBP3BA6NNM3 1639 aa18.78■□□□□ 0.6
RPE-210ENST00000438204 RIMBP3Q9UFD9 1639 aa18.78■□□□□ 0.6
RPE-210ENST00000438204 OSCARQ8IYS5 282 aa18.73■□□□□ 0.59
RPE-210ENST00000438204 CADPSQ9ULU8 1353 aa18.66■□□□□ 0.58
RPE-210ENST00000438204 CEP164Q9UPV0 1460 aa18.62■□□□□ 0.57
RPE-210ENST00000438204 MROH2BQ7Z745 1585 aa18.61■□□□□ 0.57
RPE-210ENST00000438204 ARHGEF11O15085 1522 aa18.6■□□□□ 0.57
RPE-210ENST00000438204 FANCD2Q9BXW9 1451 aa18.52■□□□□ 0.56
RPE-210ENST00000438204 URB2Q14146 1524 aaKnown RBP18.46■□□□□ 0.55
RPE-210ENST00000438204 TRHP20396 242 aaPredicted RBP18.46■□□□□ 0.55
RPE-210ENST00000438204 CYB5RLQ6IPT4 315 aa18.41■□□□□ 0.54
RPE-210ENST00000438204 WIZO95785 1651 aa18.4■□□□□ 0.54
RPE-210ENST00000438204 ARAP1Q96P48 1450 aa18.39■□□□□ 0.53
RPE-210ENST00000438204 ZNF608Q9ULD9 1512 aaPredicted RBP18.37■□□□□ 0.53
RPE-210ENST00000438204 CFTRP13569 1480 aa18.33■□□□□ 0.52
RPE-210ENST00000438204 CHD1O14646 1710 aa18.32■□□□□ 0.52
RPE-210ENST00000438204 EIF4G3O43432 1585 aaKnown RBP18.27■□□□□ 0.52
RPE-210ENST00000438204 PRDM2Q13029 1718 aa18.23■□□□□ 0.51
RPE-210ENST00000438204 IFT140Q96RY7 1462 aa18.23■□□□□ 0.51
RPE-210ENST00000438204 RSF1Q96T23 1441 aaPredicted RBP18.15■□□□□ 0.5
RPE-210ENST00000438204 TOPBP1Q92547 1522 aa18.1■□□□□ 0.49
RPE-210ENST00000438204 AQRO60306 1485 aaKnown RBP eCLIP18.06■□□□□ 0.482e-6■■□□□ 13.2
RPE-210ENST00000438204 TOP2AP11388 1531 aaKnown RBP18.05■□□□□ 0.48
RPE-210ENST00000438204 FBLN2P98095 1184 aa18.04■□□□□ 0.48
RPE-210ENST00000438204 TARBP1Q13395 1621 aaKnown RBP18.03■□□□□ 0.48
RPE-210ENST00000438204 CLASP1Q7Z460 1538 aa18.01■□□□□ 0.47
RPE-210ENST00000438204 DNMBPQ6XZF7 1577 aa17.97■□□□□ 0.47
RPE-210ENST00000438204 SYNJ1O43426 1573 aa17.89■□□□□ 0.45
RPE-210ENST00000438204 SNAPC4Q5SXM2 1469 aa17.88■□□□□ 0.45
RPE-210ENST00000438204 ABCC8Q09428 1581 aa17.88■□□□□ 0.45
RPE-210ENST00000438204 POLA1P09884 1462 aaPredicted RBP17.87■□□□□ 0.45
RPE-210ENST00000438204 ILDR1Q86SU0 546 aaPredicted RBP17.85■□□□□ 0.45
RPE-210ENST00000438204 GAPVD1Q14C86 1478 aa17.83■□□□□ 0.45
RPE-210ENST00000438204 RAD54L2Q9Y4B4 1467 aa17.83■□□□□ 0.45
RPE-210ENST00000438204 CCDC88BA6NC98 1476 aa17.82■□□□□ 0.44
RPE-210ENST00000438204 TDRD9Q8NDG6 1382 aaKnown RBP17.8■□□□□ 0.44
RPE-210ENST00000438204 KIF13AQ9H1H9 1805 aa17.77■□□□□ 0.43
RPE-210ENST00000438204 MAGI1Q96QZ7 1491 aaPredicted RBP17.74■□□□□ 0.43
RPE-210ENST00000438204 CHMP7Q8WUX9 453 aaPredicted RBP17.73■□□□□ 0.43
RPE-210ENST00000438204 ERCC6L2Q5T890 1561 aa17.73■□□□□ 0.43
RPE-210ENST00000438204 WDR97A6NE52 1622 aa17.71■□□□□ 0.43
RPE-210ENST00000438204 SYNJ2O15056 1496 aa17.7■□□□□ 0.42
RPE-210ENST00000438204 SOGA1O94964 1423 aa17.7■□□□□ 0.42
RPE-210ENST00000438204 PBRM1Q86U86 1689 aa17.68■□□□□ 0.42
RPE-210ENST00000438204 GRIN2BQ13224 1484 aa17.66■□□□□ 0.42
RPE-210ENST00000438204 FGD5Q6ZNL6 1462 aa17.66■□□□□ 0.42
RPE-210ENST00000438204 KDM4FA0A1W2PPD8 638 aa17.58■□□□□ 0.4
RPE-210ENST00000438204 CEP170Q5SW79 1584 aa17.57■□□□□ 0.4
RPE-210ENST00000438204 CUX1P39880 1505 aa17.54■□□□□ 0.4
RPE-210ENST00000438204 KDM6BO15054 1643 aa17.49■□□□□ 0.39
RPE-210ENST00000438204 SHROOM2Q13796 1616 aa17.49■□□□□ 0.39
RPE-210ENST00000438204 ABCA5Q8WWZ7 1642 aa17.49■□□□□ 0.39
RPE-210ENST00000438204 GRIN2AQ12879 1464 aa17.47■□□□□ 0.39
RPE-210ENST00000438204 DIP2BQ9P265 1576 aa17.45■□□□□ 0.38
RPE-210ENST00000438204 TSPOAP1O95153 1857 aa17.44■□□□□ 0.38
RPE-210ENST00000438204 ADAMTS12P58397 1594 aa17.44■□□□□ 0.38
RPE-210ENST00000438204 ABCC10Q5T3U5 1492 aa17.43■□□□□ 0.38
RPE-210ENST00000438204 NUP160Q12769 1436 aa17.42■□□□□ 0.38
RPE-210ENST00000438204 FAM69CQ0P6D2 419 aa17.4■□□□□ 0.38
RPE-210ENST00000438204 CHIC1Q5VXU3 224 aa17.4■□□□□ 0.38
RPE-210ENST00000438204 HECW2Q9P2P5 1572 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms