RNA–Protein interactions for RNA: ENST00000523699.5

CDK16-222, Transcript of cyclin dependent kinase 16, human

TSL 5

Gene CDK16, Length 675 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK16-222	ENST00000523699	NISCH	Q9Y2I1	1504 aa		38.95	■■■■□ 3.83
CDK16-222	ENST00000523699	CCDC180	Q9P1Z9	1646 aa		34.92	■■■■□ 3.18
CDK16-222	ENST00000523699	ABCC9	O60706	1549 aa		34.8	■■■■□ 3.16
CDK16-222	ENST00000523699	RB1CC1	Q8TDY2	1594 aa		33.22	■■■□□ 2.91
CDK16-222	ENST00000523699	NACAD	O15069	1562 aa		33	■■■□□ 2.87
CDK16-222	ENST00000523699	DCAF8L2	P0C7V8	631 aa		32.85	■■■□□ 2.85
CDK16-222	ENST00000523699	MYO15B	Q96JP2	1530 aa		32.6	■■■□□ 2.81
CDK16-222	ENST00000523699	PABPN1	Q86U42	306 aa	Known RBP eCLIP	32.38	■■■□□ 2.77	5e-6	■□□□□ 10.3
CDK16-222	ENST00000523699	DNAJC5B	Q9UF47	199 aa		32.38	■■■□□ 2.77
CDK16-222	ENST00000523699	ZCCHC6	Q5VYS8	1495 aa	Known RBP	32.34	■■■□□ 2.77
CDK16-222	ENST00000523699	UNC13A	Q9UPW8	1703 aa		32.26	■■■□□ 2.75
CDK16-222	ENST00000523699	DCAF1	Q9Y4B6	1507 aa		32.21	■■■□□ 2.75
CDK16-222	ENST00000523699	BICRA	Q9NZM4	1560 aa		32.13	■■■□□ 2.73
CDK16-222	ENST00000523699	SHROOM4	Q9ULL8	1493 aa		31.9	■■■□□ 2.7
CDK16-222	ENST00000523699	SCRIB	Q14160	1630 aa		31.82	■■■□□ 2.69
CDK16-222	ENST00000523699	EIF4G1	Q04637	1599 aa	Known RBP	31.41	■■■□□ 2.62
CDK16-222	ENST00000523699	CC2D2A	Q9P2K1	1620 aa		31.41	■■■□□ 2.62
CDK16-222	ENST00000523699	CECR2	Q9BXF3	1484 aa		31.36	■■■□□ 2.61
CDK16-222	ENST00000523699	NCAPD3	P42695	1498 aa		30.44	■■■□□ 2.46
CDK16-222	ENST00000523699	ATAD2B	Q9ULI0	1458 aa		30.37	■■■□□ 2.45
CDK16-222	ENST00000523699	SMARCA4	P51532	1647 aa		30.36	■■■□□ 2.45
CDK16-222	ENST00000523699	SMARCA2	P51531	1590 aa		30.35	■■■□□ 2.45
CDK16-222	ENST00000523699	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	30.28	■■■□□ 2.44
CDK16-222	ENST00000523699	HMGXB3	Q12766	1538 aa		30.27	■■■□□ 2.44
CDK16-222	ENST00000523699	BAZ1B	Q9UIG0	1483 aa	Known RBP	30.14	■■■□□ 2.42
CDK16-222	ENST00000523699	ERCC6	Q03468	1493 aa		30.12	■■■□□ 2.41
CDK16-222	ENST00000523699	PEG3	Q9GZU2	1588 aa		30.07	■■■□□ 2.4
CDK16-222	ENST00000523699	CUX2	O14529	1486 aa		30	■■■□□ 2.39
CDK16-222	ENST00000523699	MROH2B	Q7Z745	1585 aa		29.98	■■■□□ 2.39
CDK16-222	ENST00000523699	NES	P48681	1621 aa		29.87	■■■□□ 2.37
CDK16-222	ENST00000523699	LAMC3	Q9Y6N6	1575 aa		29.77	■■■□□ 2.36
CDK16-222	ENST00000523699	DNAJC5	Q9H3Z4	198 aa		29.75	■■■□□ 2.35
CDK16-222	ENST00000523699	PDS5B	Q9NTI5	1447 aa		29.63	■■■□□ 2.33
CDK16-222	ENST00000523699	WIZ	O95785	1651 aa		29.6	■■■□□ 2.33
CDK16-222	ENST00000523699	THOC2	Q8NI27	1593 aa	Known RBP	29.59	■■■□□ 2.33
CDK16-222	ENST00000523699	CADPS	Q9ULU8	1353 aa		29.54	■■■□□ 2.32
CDK16-222	ENST00000523699	KIF21A	Q7Z4S6	1674 aa		29.47	■■■□□ 2.31
CDK16-222	ENST00000523699	RSF1	Q96T23	1441 aa	Predicted RBP	29.43	■■■□□ 2.3
CDK16-222	ENST00000523699	MRC2	Q9UBG0	1479 aa		29.36	■■■□□ 2.29
CDK16-222	ENST00000523699	TOP2A	P11388	1531 aa	Known RBP	29.34	■■■□□ 2.29
CDK16-222	ENST00000523699	CEP164	Q9UPV0	1460 aa		29.28	■■■□□ 2.28
CDK16-222	ENST00000523699	WDR62	O43379	1518 aa		29.25	■■■□□ 2.27
CDK16-222	ENST00000523699	CFTR	P13569	1480 aa		29.23	■■■□□ 2.27
CDK16-222	ENST00000523699	FANCD2	Q9BXW9	1451 aa		29.22	■■■□□ 2.27
CDK16-222	ENST00000523699	CCDC88B	A6NC98	1476 aa		28.94	■■■□□ 2.22
CDK16-222	ENST00000523699	URB2	Q14146	1524 aa	Known RBP	28.92	■■■□□ 2.22
CDK16-222	ENST00000523699	PRDM2	Q13029	1718 aa		28.86	■■■□□ 2.21
CDK16-222	ENST00000523699	IFT140	Q96RY7	1462 aa		28.68	■■■□□ 2.18
CDK16-222	ENST00000523699	ABCC8	Q09428	1581 aa		28.67	■■■□□ 2.18
CDK16-222	ENST00000523699	TOPBP1	Q92547	1522 aa		28.65	■■■□□ 2.18
CDK16-222	ENST00000523699	OSCAR	Q8IYS5	282 aa		28.61	■■■□□ 2.17
CDK16-222	ENST00000523699	DNMBP	Q6XZF7	1577 aa		28.58	■■■□□ 2.17
CDK16-222	ENST00000523699	TRIM41	Q8WV44	630 aa		28.56	■■■□□ 2.16
CDK16-222	ENST00000523699	ZNF608	Q9ULD9	1512 aa	Predicted RBP	28.53	■■■□□ 2.16
CDK16-222	ENST00000523699	EIF4G3	O43432	1585 aa	Known RBP	28.43	■■■□□ 2.14
CDK16-222	ENST00000523699	POLA1	P09884	1462 aa	Predicted RBP	28.38	■■■□□ 2.13
CDK16-222	ENST00000523699	TARBP1	Q13395	1621 aa	Known RBP	28.35	■■■□□ 2.13
CDK16-222	ENST00000523699	AQR	O60306	1485 aa	Known RBP eCLIP	28.3	■■■□□ 2.12	7e-6	■■□□□ 12.2
CDK16-222	ENST00000523699	SOGA1	O94964	1423 aa		28.26	■■■□□ 2.11
CDK16-222	ENST00000523699	RAD54L2	Q9Y4B4	1467 aa		28.23	■■■□□ 2.11
CDK16-222	ENST00000523699	SUPT5H	O00267	1087 aa	Known RBP	28.23	■■■□□ 2.11
CDK16-222	ENST00000523699	FGD5	Q6ZNL6	1462 aa		28.22	■■■□□ 2.11
CDK16-222	ENST00000523699	RIMBP3C	A6NJZ7	1639 aa		28.18	■■■□□ 2.1
CDK16-222	ENST00000523699	RIMBP3B	A6NNM3	1639 aa		28.18	■■■□□ 2.1
CDK16-222	ENST00000523699	RIMBP3	Q9UFD9	1639 aa		28.18	■■■□□ 2.1
CDK16-222	ENST00000523699	WDR97	A6NE52	1622 aa		28.18	■■■□□ 2.1
CDK16-222	ENST00000523699	CUX1	P39880	1505 aa		28.18	■■■□□ 2.1
CDK16-222	ENST00000523699	TDRD9	Q8NDG6	1382 aa	Known RBP	28.16	■■■□□ 2.1
CDK16-222	ENST00000523699	FBLN2	P98095	1184 aa		28.16	■■■□□ 2.1
CDK16-222	ENST00000523699	ARHGEF11	O15085	1522 aa		28.15	■■■□□ 2.1
CDK16-222	ENST00000523699	CHD1	O14646	1710 aa		28.12	■■■□□ 2.09
CDK16-222	ENST00000523699	SNAPC4	Q5SXM2	1469 aa		28.08	■■■□□ 2.09
CDK16-222	ENST00000523699	GRIN2B	Q13224	1484 aa		28.03	■■■□□ 2.08
CDK16-222	ENST00000523699	MAGI1	Q96QZ7	1491 aa	Predicted RBP	28.03	■■■□□ 2.08
CDK16-222	ENST00000523699	CHMP7	Q8WUX9	453 aa	Predicted RBP	27.97	■■■□□ 2.07
CDK16-222	ENST00000523699	GAPVD1	Q14C86	1478 aa		27.93	■■■□□ 2.06
CDK16-222	ENST00000523699	SYNJ1	O43426	1573 aa		27.92	■■■□□ 2.06
CDK16-222	ENST00000523699	SYNJ2	O15056	1496 aa		27.92	■■■□□ 2.06
CDK16-222	ENST00000523699	ABCA10	Q8WWZ4	1543 aa		27.92	■■■□□ 2.06
CDK16-222	ENST00000523699	CYB5RL	Q6IPT4	315 aa		27.91	■■■□□ 2.06
CDK16-222	ENST00000523699	ARAP1	Q96P48	1450 aa		27.87	■■■□□ 2.05
CDK16-222	ENST00000523699	CLASP1	Q7Z460	1538 aa		27.87	■■■□□ 2.05
CDK16-222	ENST00000523699	WRN	Q14191	1432 aa	Predicted RBP eCLIP	27.86	■■■□□ 2.05
CDK16-222	ENST00000523699	PBRM1	Q86U86	1689 aa		27.84	■■■□□ 2.05
CDK16-222	ENST00000523699	ABCA5	Q8WWZ7	1642 aa		27.84	■■■□□ 2.05
CDK16-222	ENST00000523699	TOP2B	Q02880	1626 aa		27.78	■■■□□ 2.04
CDK16-222	ENST00000523699	BIVM-ERCC5	R4GMW8	1640 aa		27.77	■■■□□ 2.04
CDK16-222	ENST00000523699	GRIN2A	Q12879	1464 aa		27.66	■■■□□ 2.02
CDK16-222	ENST00000523699	ADAMTS12	P58397	1594 aa		27.65	■■■□□ 2.02
CDK16-222	ENST00000523699	TRH	P20396	242 aa	Predicted RBP	27.62	■■■□□ 2.01
CDK16-222	ENST00000523699	FHAD1	B1AJZ9	1412 aa		27.59	■■■□□ 2.01
CDK16-222	ENST00000523699	ERICH3	Q5RHP9	1530 aa		27.58	■■■□□ 2.01
CDK16-222	ENST00000523699	NUP160	Q12769	1436 aa		27.54	■■■□□ 2
CDK16-222	ENST00000523699	CEP170	Q5SW79	1584 aa		27.51	■■□□□ 1.99
CDK16-222	ENST00000523699	ERCC6L2	Q5T890	1561 aa		27.37	■■□□□ 1.97
CDK16-222	ENST00000523699	SHROOM2	Q13796	1616 aa		27.37	■■□□□ 1.97
CDK16-222	ENST00000523699	KIF27	Q86VH2	1401 aa		27.32	■■□□□ 1.96
CDK16-222	ENST00000523699	PRG4	Q92954	1404 aa	Predicted RBP	27.27	■■□□□ 1.96
CDK16-222	ENST00000523699	RUSC2	Q8N2Y8	1516 aa		27.26	■■□□□ 1.96
CDK16-222	ENST00000523699	JPH4	Q96JJ6	628 aa		27.23	■■□□□ 1.95

Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms